New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3808111 = | NA (NA) | 6 (0.130) | 5/246 | NT | NA | coding (1631/1644 nt) | PP_3365 | acetolactate synthase |
? | NC_002947 | 3808128 = | NA (NA) | coding (1614/1644 nt) | PP_3365 | acetolactate synthase |
CTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTG > NC_002947/3807980‑3808254 | cTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGc < 2:483685/150‑1 (MQ=255) tGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCt > 1:972428/1‑150 (MQ=255) gAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTg > 2:184234/1‑150 (MQ=255) cagcCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCTGCCTGTCAGGGCGTACACCTGCAGGTCGCGCTCACGCAGCTCGCTGTTGa > 1:253563/1‑150 (MQ=255) agcCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAg < 2:972428/150‑1 (MQ=255) tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCgg < 1:184234/150‑1 (MQ=255) tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCgg > 2:64272/1‑150 (MQ=255) gtcccGTAAAGCCGACACATTCACGTCCGCTATCCGGGCCTCTTTGTAGCTCCAGGCAGAGCCGGCAACAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCt < 2:253563/148‑1 (MQ=25) tAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATc > 1:91023/1‑150 (MQ=255) gCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGGCAGGGCTGACACCGCCAGGGCGCGCTCGCGTAGCTCGCTGTTGAGGATGCGGTAGTTCTAGCTGTAGTCGAcc > 2:972711/1‑150 (MQ=38) cGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCgg < 1:556997/150‑1 (MQ=255) cacaTTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCa > 1:721589/1‑150 (MQ=255) acaTTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAg < 2:547194/150‑1 (MQ=255) tCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg < 2:851572/150‑1 (MQ=255) tCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg > 1:190437/1‑150 (MQ=255) ataCGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGcaca > 2:678965/1‑150 (MQ=255) taCGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac < 2:721589/150‑1 (MQ=255) ggCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTgg > 1:558132/1‑150 (MQ=255) tctTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTc > 2:1077681/1‑150 (MQ=255) gcagcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGAt > 2:28018/1‑150 (MQ=255) cagcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATg < 2:645448/150‑1 (MQ=255) agcaCCAGGCCGCGCCGGCAAAAAGACGGCGACGGAAACTCAAAGCTCCCACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGc > 1:1114809/1‑150 (MQ=17) gcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCa < 2:91023/150‑1 (MQ=255) caCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGACTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAg < 2:854933/150‑1 (MQ=255) ccAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGAAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTg < 1:64272/150‑1 (MQ=255) cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg < 1:440699/123‑1 (MQ=255) cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg > 2:440699/1‑123 (MQ=255) cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAgcga < 1:42129/150‑4 (MQ=255) aGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac < 2:55330/129‑1 (MQ=255) aGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac > 1:55330/1‑129 (MQ=255) ccGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCagcagc < 1:562255/150‑1 (MQ=255) aaaaaGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGTGGTCTTGATGCAGTGCTCCAGCAGCGgcag > 2:799882/1‑150 (MQ=255) aaGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGcagcag > 1:744082/1‑150 (MQ=255) aGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGTGTGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAgg < 1:1047882/150‑1 (MQ=255) gcCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCgg < 2:1131245/150‑1 (MQ=255) ccTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCtt < 1:28018/150‑1 (MQ=40) tCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCa > 2:478226/1‑150 (MQ=38) ggCTTACACCGCCAGGGCGCGCTCACGGAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCCGCAGCAGGCCTTCGGCGCTTTCCAcgcg > 1:886866/1‑150 (MQ=18) acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg > 2:510018/1‑150 (MQ=32) acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg > 1:483528/1‑150 (MQ=32) acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg > 1:574056/1‑150 (MQ=32) ccGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGa < 2:39121/96‑1 (MQ=34) ccGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGa > 1:39121/1‑96 (MQ=34) gCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTg > 1:738134/1‑150 (MQ=32) | CTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTG > NC_002947/3807980‑3808254 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |