New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3808111 =	NA (NA)	6 (0.130)	5/246	NT	NA	coding (1631/1644 nt)	PP_3365	acetolactate synthase
	?	NC_002947	3808128 =	NA (NA)					coding (1614/1644 nt)	PP_3365	acetolactate synthase

CTGGGGTGAATGGGATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTG  >  NC_002947/3807963‑3808254                                                                                                                                                     |                                                                                                                                                cTGGGGTGAATGGGATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGgc                                                                                                                                                >  2:562255/1‑150 (MQ=255)      gTGAATGGGATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCt                                                                                                                                           >  2:42129/1‑150 (MQ=255)             ggATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCATTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGCGCGCCCCCACGccc                                                                                                                                    >  2:887461/1‑148 (MQ=255)              gATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGc                                                                                                                                   >  1:547194/1‑150 (MQ=255)                  cTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGc                                                                                                                               <  2:483685/150‑1 (MQ=255)                   tGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCt                                                                                                                              >  1:972428/1‑150 (MQ=255)                    gAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTg                                                                                                                             >  2:184234/1‑150 (MQ=255)                        cagcCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCTGCCTGTCAGGGCGTACACCTGCAGGTCGCGCTCACGCAGCTCGCTGTTGa                                                                                                                         >  1:253563/1‑150 (MQ=255)                         agcCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAg                                                                                                                        <  2:972428/150‑1 (MQ=255)                                tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGgcgcgc                                                                                                                                            >  2:579527/1‑123 (MQ=255)                                tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCgg                                                                                                                 <  1:184234/150‑1 (MQ=255)                                tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCgg                                                                                                                 >  2:64272/1‑150 (MQ=255)                                tATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCAGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGgcgcgc                                                                                                                                            <  1:579527/123‑1 (MQ=255)                                           gtcccGTAAAGCCGACACATTCACGTCCGCTATCCGGGCCTCTTTGTAGCTCCAGGCAGAGCCGGCAACAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCt                                                                                                      <  2:253563/148‑1 (MQ=25)                                                 tAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATc                                                                                                >  1:91023/1‑150 (MQ=255)                                                     gCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGGCAGGGCTGACACCGCCAGGGCGCGCTCGCGTAGCTCGCTGTTGAGGATGCGGTAGTTCTAGCTGTAGTCGAcc                                                                                            >  2:972711/1‑150 (MQ=38)                                                       cGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCgg                                                                                          <  1:556997/150‑1 (MQ=255)                                                          cacaTTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCa                                                                                       >  1:721589/1‑150 (MQ=255)                                                           acaTTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAg                                                                                      <  2:547194/150‑1 (MQ=255)                                                                    tCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg                                                                             <  2:851572/150‑1 (MQ=255)                                                                    tCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg                                                                             >  1:190437/1‑150 (MQ=255)                                                                          ataCGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGcaca                                                                       >  2:678965/1‑150 (MQ=255)                                                                           taCGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac                                                                      <  2:721589/150‑1 (MQ=255)                                                                               ggCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTgg                                                                  >  1:558132/1‑150 (MQ=255)                                                                                   tctTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTc                                                              >  2:1077681/1‑150 (MQ=255)                                                                                        gcagcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGAt                                                         >  2:28018/1‑150 (MQ=255)                                                                                         cagcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATg                                                        <  2:645448/150‑1 (MQ=255)                                                                                          agcaCCAGGCCGCGCCGGCAAAAAGACGGCGACGGAAACTCAAAGCTCCCACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGc                                                       >  1:1114809/1‑150 (MQ=17)                                                                                           gcaCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCa                                                      <  2:91023/150‑1 (MQ=255)                                                                                            caCCAGGCCGCGCCGGCAAAAAGACGGCGCCGGACTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAg                                                     <  2:854933/150‑1 (MQ=255)                                                                                              ccAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGAAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTg                                                   <  1:64272/150‑1 (MQ=255)                                                                                               cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg                                                                             >  2:440699/1‑123 (MQ=255)                                                                                               cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACg                                                                             <  1:440699/123‑1 (MQ=255)                                                                                               cAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAgcga                                                  <  1:42129/150‑4 (MQ=255)                                                                                                aGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac                                                                      <  2:55330/129‑1 (MQ=255)                                                                                                aGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCacac                                                                      >  1:55330/1‑129 (MQ=255)                                                                                                        ccGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCagcagc                                         <  1:562255/150‑1 (MQ=255)                                                                                                             aaaaaGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGTGGTCTTGATGCAGTGCTCCAGCAGCGgcag                                    >  2:799882/1‑150 (MQ=255)                                                                                                                aaGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGcagcag                                 >  1:744082/1‑150 (MQ=255)                                                                                                                 aGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGTGTGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAgg                                <  1:1047882/150‑1 (MQ=255)                                                                                                                        gcCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCgg                         <  2:1131245/150‑1 (MQ=255)                                                                                                                             ccTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCtt                    <  1:28018/150‑1 (MQ=40)                                                                                                                                 tCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCa                >  2:478226/1‑150 (MQ=38)                                                                                                                                     ggCTTACACCGCCAGGGCGCGCTCACGGAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCCGCAGCAGGCCTTCGGCGCTTTCCAcgcg            >  1:886866/1‑150 (MQ=18)                                                                                                                                            acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg     >  1:574056/1‑150 (MQ=32)                                                                                                                                            acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg     >  1:483528/1‑150 (MQ=32)                                                                                                                                            acCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCg     >  2:510018/1‑150 (MQ=32)                                                                                                                                             ccGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGa                                                          >  1:39121/1‑96 (MQ=34)                                                                                                                                             ccGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGa                                                          <  2:39121/96‑1 (MQ=34)                                                                                                                                               gCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTg  >  1:738134/1‑150 (MQ=32)                                                                                                                                                     |                                                                                                                                                CTGGGGTGAATGGGATACTGAAGCAGCCTTGTATTGCGAAAAGGCCCGTAAAGCCGACACATTACCGTCAGCTATACGGGCCTCTTTGCAGCACCAGGCCGCGCCGGCAAAAAGACGGCGCCGGCCTGTCAGGGCTTACACCGCCAGGGCGCGCTCACGCAGCTCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTG  >  NC_002947/3807963‑3808254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.