New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3943709 =	43 (0.950)	4 (0.090)	4/240	NT	8.8%	coding (228/1866 nt)	PP_3478	secretion protein
	?	NC_002947	3943740 =	41 (0.940)					coding (197/1866 nt)	PP_3478	secretion protein

AGTGCGGTTCGCCAGGACAGCGACCAGCTGATGAAAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3943858‑3943709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACGCA  >  NC_002947/3943740‑3943885                                                                                                                                                                                                                                                                                                          AGTGCGGTTCGCCAGGACAGCGACCAGCTGATGAAAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCC                                                                                                                                                    >  2:1021279/1‑150              AGGACAGCGACCAGCTGATGAAAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCC                                                                                                                                                    >  1:320493/1‑137              AGGACAGCGACCAGCTGATGAAAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCC                                                                                                                                                    <  2:320493/137‑1                                   AAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGC                                                                                                                                                     >  1:521898/1‑115                                   AAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGC                                                                                                                                                     <  2:521898/115‑1                                                                                                                    CCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCCAGGGCGATATTCAGCTCTGTATCACGCGGA                                                                                                                      >  1:66990/1‑65                                                                                                                    CCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCCAGGGCGATATTCAGCTCTGTATCACGCGGA                                                                                                                      <  2:66990/65‑1                                                                                                                         GCCCACAGCCGCCAGGCGGCGGTCGAGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCC                                                                   >  1:566834/1‑111                                                                                                                         GCCCACAGCCGCCAGGCGGCGGTCGAGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCC                                                                   <  2:566834/111‑1                                                                                                                                                   GGCCAGGGCGATATTCGGCTCTGTATCACGCGGAAAGTACCACTTGTCGTCTTCCATGTGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACGCc  >  2:41912/1‑149                                                                                                                                                                                                                                                                                                          AGTGCGGTTCGCCAGGACAGCGACCAGCTGATGAAAGAGGGCCAGTACGAGGCCGGCATCGCTCGCCTGGAAGAGGCCCTGCGCGACGATCCGCGTGATACAGAGCTGAATATCGCCCTGGCCCACAGCCGCCAGGCGGCGGTCGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3943858‑3943709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACGCA  >  NC_002947/3943740‑3943885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.