New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3943709 =	43 (0.950)	4 (0.090)	4/240	NT	8.8%	coding (228/1866 nt)	PP_3478	secretion protein
	?	NC_002947	3943740 =	41 (0.940)					coding (197/1866 nt)	PP_3478	secretion protein

GGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACGCA  >  NC_002947/3943591‑3943885                                                                                                                                                      |                                                                                                                                                  ggCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACTCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCa                                                                                                                                                   <  1:1056031/150‑1 (MQ=255)    gAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                                                >  1:872312/1‑150 (MQ=255)    gAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                                                >  1:88567/1‑150 (MQ=255)            tCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGACATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTc                                                                                                                                        <  2:227058/150‑1 (MQ=255)                         ggTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCAc                                                                                                                           >  1:1021279/1‑150 (MQ=255)                           ttgttCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCAcgc                                                                                                                         >  2:781811/1‑150 (MQ=255)                              ttCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGa                                                                                                                      <  1:796912/150‑1 (MQ=255)                                     ccAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTcgc                                                                                                               >  2:485784/1‑150 (MQ=255)                                               cACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCctc                                                                                                     >  2:1020805/1‑150 (MQ=255)                                               cACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCctc                                                                                                     >  2:1020214/1‑150 (MQ=255)                                                  ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                                                  >  2:176448/1‑150 (MQ=255)                                                  ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                                                  >  1:554520/1‑150 (MQ=255)                                                  ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                                                  >  1:1010521/1‑150 (MQ=255)                                                                tCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGc                                                                                    >  1:237474/1‑150 (MQ=255)                                                                tCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGc                                                                                    <  2:872312/150‑1 (MQ=255)                                                                       aTTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTc                                                                             <  1:1088101/150‑1 (MQ=255)                                                                             gAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTg                                                                       <  2:1010521/150‑1 (MQ=255)                                                                                 tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                                                   >  2:983371/1‑150 (MQ=255)                                                                                 tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                                                   >  1:312389/1‑150 (MQ=255)                                                                                 tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                                                   <  1:485784/150‑1 (MQ=255)                                                                                     ggCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCtt                                                               <  2:312389/150‑1 (MQ=255)                                                                                      gCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCttt                                                              <  1:315507/150‑1 (MQ=255)                                                                                         tccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                                                >  1:66990‑M1/31‑65 (MQ=255)                                                                                         tccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                                                <  2:66990‑M1/35‑1 (MQ=255)                                                                                          aCGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTtcatc                                                          <  2:237474/150‑1 (MQ=255)                                                                                             cgGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGc                                                       <  1:896732/150‑1 (MQ=255)                                                                                               gTCGGTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAg                                                                                               <  2:72493/108‑1 (MQ=255)                                                                                               gTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAg                                                                                               >  1:72493/1‑108 (MQ=255)                                                                                                ccGCTGTCGGCCTGGCCAATGAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTgg                                                    <  2:247181/149‑1 (MQ=255)                                                                                                  gCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCa                                                                                                <  1:861875/104‑1 (MQ=255)                                                                                                  gCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCa                                                                                                >  2:861875/1‑104 (MQ=255)                                                                                                       cGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGt                                             <  2:554520/150‑1 (MQ=255)                                                                                                         gCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGc                                                                                                        <  2:730978/89‑1 (MQ=255)                                                                                                         gCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGc                                                                                                        >  1:730978/1‑89 (MQ=255)                                                                                                            tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg                                        <  1:1020805/150‑1 (MQ=255)                                                                                                            tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg                                        <  1:1162144/150‑1 (MQ=255)                                                                                                            tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg                                        <  1:1020214/150‑1 (MQ=255)                                                                                                             ggCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGc                                       <  1:631947/150‑1 (MQ=255)                                                                                                                cAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGaa                                    >  2:716591/1‑150 (MQ=255)                                                                                                                cAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGaa                                    <  2:551541/150‑1 (MQ=255)                                                                                                                  aTCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAAcc                                  <  1:176448/150‑1 (MQ=255)                                                                                                                   tCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCctct                                                                <  1:441364/119‑1 (MQ=255)                                                                                                                   tCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCctct                                                                >  2:441364/1‑119 (MQ=255)                                                                                                                   ccctggcccacagccgccaggcggcggtcgaggccAGGGCGATATTCAGCTCTGTATCACGCGGa                                                                                                                      <  2:66990‑M2/30‑1 (MQ=255)                                                                                                                   ccctggcccacagccgccaggcggcggtcgaggccAGGGCGATATTCAGCTCTGTATCACGCGGa                                                                                                                      >  1:66990‑M2/36‑65 (MQ=255)                                                                                                                       GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCt                                          <  2:320493‑M1/137‑1 (MQ=255)                                                                                                                       GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCt                                          >  1:320493‑M1/1‑137 (MQ=255)                                                                                                                       GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACt                             >  2:1021279‑M1/1‑150 (MQ=255)                                                                                                                        gcccacagccgccaggcggcggtcgaggccAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                                                   <  2:566834‑M2/81‑1 (MQ=255)                                                                                                                        gcccacagccgccaggcggcggtcgaggccAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                                                   >  1:566834‑M2/31‑111 (MQ=255)                                                                                                                        GCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCtt                                                               <  2:521898‑M1/115‑1 (MQ=255)                                                                                                                        GCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCtt                                                               >  1:521898‑M1/1‑115 (MQ=255)                                                                                                                           tCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAg                         >  2:1158808/1‑150 (MQ=255)                                                                                                                            ggACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGc                        <  2:88567/149‑1 (MQ=255)                                                                                                                                   cgccTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAAcc                 <  2:819639/150‑1 (MQ=255)                                                                                                                                                  ggccAGGGCGATATTCGGCTCTGTATCACGCGGAAAGTACCACTTGTCGTCTTCCATGTGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACgcc  >  2:41912‑M2/5‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACTGGAGCCGCAACCGGCAATGGCCACGCA  >  NC_002947/3943591‑3943885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.