New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3943709 =	43 (0.950)	4 (0.090)	4/240	NT	8.8%	coding (228/1866 nt)	PP_3478	secretion protein
	?	NC_002947	3943740 =	41 (0.940)					coding (197/1866 nt)	PP_3478	secretion protein

CGTTCGTCCAGGGTGCGGATCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACT  >  NC_002947/3943560‑3943858                                                                                                                                                      |                                                                                                                                                      cGTTCGTCCAGGGTGCGGATCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAgg                                                                                                                                                       <  1:523068/150‑1 (MQ=255)    ggcgtggccattgccggttgcggctccagtgcggttcgccaggacagcgaccagctgatgaaagagggccagtacgaggccggcatcgctcacatggaagacgacaagtggtactttccgcgtgatacagagccgaatatcgccctGGcc                                                                                                                                                    >  2:41912‑M1/147‑150 (MQ=255)        ccAGGGTGCGGATCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCAGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGa                                                                                                                                                >  2:896732/1‑150 (MQ=255)                  gATCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCgccgccag                                                                                                                                      <  2:966296/150‑3 (MQ=255)                    tCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGGAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTggc                                                                                                                                    <  1:745323/150‑1 (MQ=255)                                ggCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACTCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCa                                                                                                                        <  1:1056031/150‑1 (MQ=255)                                   gAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                     >  1:88567/1‑150 (MQ=255)                                   gAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                     >  1:872312/1‑150 (MQ=255)                                           tCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGACATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTc                                                                                                             <  2:227058/150‑1 (MQ=255)                                                        ggTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCAc                                                                                                >  1:1021279/1‑150 (MQ=255)                                                          ttgttCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCAcgc                                                                                              >  2:781811/1‑150 (MQ=255)                                                             ttCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGa                                                                                           <  1:796912/150‑1 (MQ=255)                                                                    ccAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTcgc                                                                                    >  2:485784/1‑150 (MQ=255)                                                                     gggccagtacgaggccggcatcgctcgcctggaagaggccctgcgcgacgatccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGc                                                                                                                          >  1:566834‑M1/82‑111 (MQ=255)                                                                     gggccagtacgaggccggcatcgctcgcctggaagaggccctgcgcgacgatccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGc                                                                                                                          <  2:566834‑M1/30‑1 (MQ=255)                                                                              cACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCctc                                                                          >  2:1020805/1‑150 (MQ=255)                                                                              cACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCctc                                                                          >  2:1020214/1‑150 (MQ=255)                                                                               aCCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTgg                                                                                                                            >  2:1160866/1‑99 (MQ=255)                                                                               aCCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTgg                                                                                                                            <  1:1160866/99‑1 (MQ=255)                                                                                 ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                       >  1:554520/1‑150 (MQ=255)                                                                                 ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                       >  2:176448/1‑150 (MQ=255)                                                                                 ccGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTc                                                                       >  1:1010521/1‑150 (MQ=255)                                                                                               tCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGc                                                         >  1:237474/1‑150 (MQ=255)                                                                                               tCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGc                                                         <  2:872312/150‑1 (MQ=255)                                                                                                      aTTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTc                                                  <  1:1088101/150‑1 (MQ=255)                                                                                                            gAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTg                                            <  2:1010521/150‑1 (MQ=255)                                                                                                                tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                        >  1:312389/1‑150 (MQ=255)                                                                                                                tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                        <  1:485784/150‑1 (MQ=255)                                                                                                                tCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGccc                                        >  2:983371/1‑150 (MQ=255)                                                                                                                    ggCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCtt                                    <  2:312389/150‑1 (MQ=255)                                                                                                                     gCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCttt                                   <  1:315507/150‑1 (MQ=255)                                                                                                                        tccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                     >  1:66990‑M1/31‑65 (MQ=255)                                                                                                                        tccgcgtgatacagagctgaatatcgccctGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAggg                                                                                                                     <  2:66990‑M1/35‑1 (MQ=255)                                                                                                                         aCGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTtcatc                               <  2:237474/150‑1 (MQ=255)                                                                                                                            cgGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGc                            <  1:896732/150‑1 (MQ=255)                                                                                                                              gTCGGTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAg                                                                    <  2:72493/108‑1 (MQ=255)                                                                                                                              gTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAg                                                                    >  1:72493/1‑108 (MQ=255)                                                                                                                               ccGCTGTCGGCCTGGCCAATGAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTgg                         <  2:247181/149‑1 (MQ=255)                                                                                                                                 gCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCa                                                                     <  1:861875/104‑1 (MQ=255)                                                                                                                                 gCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCa                                                                     >  2:861875/1‑104 (MQ=255)                                                                                                                                      cGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGt                  <  2:554520/150‑1 (MQ=255)                                                                                                                                        gCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGc                                                                             >  1:730978/1‑89 (MQ=255)                                                                                                                                        gCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGc                                                                             <  2:730978/89‑1 (MQ=255)                                                                                                                                           tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg             <  1:1020214/150‑1 (MQ=255)                                                                                                                                           tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg             <  1:1020805/150‑1 (MQ=255)                                                                                                                                           tGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTgg             <  1:1162144/150‑1 (MQ=255)                                                                                                                                            ggCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGc            <  1:631947/150‑1 (MQ=255)                                                                                                                                               cAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGaa         >  2:716591/1‑150 (MQ=255)                                                                                                                                               cAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGaa         <  2:551541/150‑1 (MQ=255)                                                                                                                                                 aTCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAAcc       <  1:176448/150‑1 (MQ=255)                                                                                                                                                  tCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCctct                                     <  1:441364/119‑1 (MQ=255)                                                                                                                                                  tCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCctct                                     >  2:441364/1‑119 (MQ=255)                                                                                                                                                      GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCt               >  1:320493‑M1/1‑137 (MQ=255)                                                                                                                                                      GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCt               <  2:320493‑M1/137‑1 (MQ=255)                                                                                                                                                      GGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACt  >  2:1021279‑M1/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGTTCGTCCAGGGTGCGGATCAGCTCCAGCTGGCGAATGCCTTCCTGGGCGCGGCGGTTGTTCGGCTCCAGGGTGAGCACCCGGCCGTAGCCCATCCGGGCATTGGCGAAGTCATGGCGGACGCGGTCGCTGTCGGCCTGGCCAATCAGGGCCTCGACCGCCGCCTGGCGGCTGTGGGCCAGGGCGATATTCAGCTCTGTATCACGCGGATCGTCGCGCAGGGCCTCTTCCAGGCGAGCGATGCCGGCCTCGTACTGGCCCTCTTTCATCAGCTGGTCGCTGTCCTGGCGAACCGCACT  >  NC_002947/3943560‑3943858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.