New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4017678	39 (0.860)	4 (0.090)	4/238	NT	9.4%	coding (69/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4017710	40 (0.920)					coding (101/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4017526‑4017678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGTGCTTCCAGTTCTGCGACGCGCGCCTGCAATCGGGCAAAGGACGCAAGCGTATCTGGCTGCATGACGAGGGCCTGATGATCGAAACCAGCAACTATAGTCGCCGCTCGGG  <  NC_002947/4017710‑4017563                                                                                                                                                                                                                                                                                                               CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGC                                                                                                                                                         >  1:117101/1‑150   CGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTTCAGGCGCGCGTCGCAGAACTGGAAGCACGCCT                                                                                                                                                       <  1:585106/150‑1                                                                        TCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGT                                                                                                               >  1:1035140/1‑121                                                                        TCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGT                                                                                                               <  2:1035140/121‑1                                                                             CCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCA                                                                                                                    <  1:1078360/111‑1                                                                             CCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCA                                                                                                                    >  2:1078360/1‑111                                                                                                                                                       CTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGTGCTTCCAGTTCTGCGACGCGCGCCTGCAATCGGGCAAAGGACGCAAGCGTATCTGGCTGCATGACGAGGGCCTGATGATCGAAACCAGCAACTATAGTCGCCGCTCGG   >  1:340260/1‑150                                                                                                                                                       CTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGTGCTTCCAGTTCTGCGACGCGCGCCTGCAATCGGGCAAAGGACGCAAGCGTATCTGGCTGCATGACGAGGGCCTGATGATCGAAACCAGCAACTATAGTCGCCGCTCGG   <  1:454668/150‑1                                                                                                                                                        TGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGTGCTTCCAGTTCTGCGACGCGCGCCTGCAATCGGGCAAAGGACGCAAGCGTATCTGGCTGCATGACGAGGGCCTGATGATCGAAACCAGCAACTATAGTCGCCGCTCGGG  >  2:275458/1‑150                                                                                                                                                                                                                                                                                                               CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4017526‑4017678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGTGCTTCCAGTTCTGCGACGCGCGCCTGCAATCGGGCAAAGGACGCAAGCGTATCTGGCTGCATGACGAGGGCCTGATGATCGAAACCAGCAACTATAGTCGCCGCTCGGG  <  NC_002947/4017710‑4017563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.