New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4017678	39 (0.860)	4 (0.090)	4/238	NT	9.4%	coding (69/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4017710	40 (0.920)					coding (101/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

GGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAG  >  NC_002947/4017533‑4017826                                                                                                                                                  |                                                                                                                                                     ggATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAg                                                                                                                                                  <  2:731370/150‑1 (MQ=255)   aTCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAAGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAgcg                                                                                                                                                >  2:563842/1‑150 (MQ=255)       ttCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGcgcgcg                                                                                                                                            >  2:103266/1‑150 (MQ=255)          gCTAGTTCTGATAGCGAGGGGCCCGAGGGGCGACTATAGTTGCTGGTTGCGATCATCAGGCCCTCGTCATGAAGCCAGATACGCTTGCGTCCTTTGCGCGATTGCAGGCGGGCGTCGCAGGGCTGGAAGCACGCCTGGCAGCGCGCGAAg                                                                                                                                         >  2:510259/1‑150 (MQ=255)                  tGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGtt                                                                                                                                 >  1:412337/1‑150 (MQ=255)                      aGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAgg                                                                                                                             >  1:291903/1‑150 (MQ=255)                               cccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAca                                                                                                                    >  2:275458‑M2/1‑148 (MQ=255)                                ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGa                                                                                                                                        <  2:407848/129‑1 (MQ=255)                                ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGa                                                                                                                                        >  1:407848/1‑129 (MQ=255)                                ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcag                                                                                                                   >  1:340260‑M2/1‑147 (MQ=255)                                ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcag                                                                                                                   <  1:454668‑M2/150‑4 (MQ=255)                                   aagggcgACTATAGTTGCTGGATTCGATCATCAGGCCCTCGTCAGGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGGGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct                                                                                                                <  2:117101/147‑1 (MQ=255)                                        cgACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg                                                                                                           <  2:291903/150‑1 (MQ=255)                                                       gTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGaca                                                                                            >  1:296261/1‑150 (MQ=255)                                                       gTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGaca                                                                                            >  2:474509/1‑150 (MQ=255)                                                          tCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGGCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca                                                                                         <  2:808863/150‑1 (MQ=255)                                                             atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCg                                                                                      >  1:501365/1‑150 (MQ=255)                                                                 tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgt                                                                                                               <  2:1035140‑M1/121‑40 (MQ=255)                                                                 tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgt                                                                                                               >  1:1035140‑M1/1‑82 (MQ=255)                                                                 tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCTACAACAGCGTGGc                                                                                  <  2:412337/150‑1 (MQ=255)                                                                      cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgcca                                                                                                                    <  1:1078360‑M1/111‑35 (MQ=255)                                                                      cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgcca                                                                                                                    >  2:1078360‑M1/1‑77 (MQ=255)                                                                      cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACg                                                                             >  2:753540/1‑150 (MQ=255)                                                                       ccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgt                                                                            >  1:544556/1‑150 (MQ=255)                                                                         tCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                          >  2:234386/1‑150 (MQ=255)                                                                             cATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc                                                                      <  1:753540/150‑1 (MQ=255)                                                                                  aGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCg                                                                 >  2:405337/1‑150 (MQ=255)                                                                                      aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCg                                                             >  1:945920/1‑150 (MQ=255)                                                                                       gATACGCTTGCGTCCTTTGCCCGAGTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgc                                                            >  2:107857/1‑150 (MQ=255)                                                                                        gtACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgca                                                           <  2:915121/149‑1 (MQ=255)                                                                                                gCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATgcgc                                                   <  1:405337/150‑1 (MQ=255)                                                                                                      tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                          <  1:843575/121‑1 (MQ=255)                                                                                                      tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                          >  2:843575/1‑121 (MQ=255)                                                                                                         gCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGcc                                          >  1:359983/1‑150 (MQ=255)                                                                                                                 gCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCg                                  >  1:941255/1‑150 (MQ=255)                                                                                                                     gcgcgcGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc                                                                              <  2:460832/102‑1 (MQ=255)                                                                                                                     gcgcgcGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc                                                                              >  1:460832/1‑102 (MQ=255)                                                                                                                         gcgTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGCCAACGTTCAGGTGCATGACAGGCTCCTTGGAGAACCGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGAACGCAGCATGCGCCTCTTGGACATCAACCGCACGgcgc                          <  2:483622/150‑1 (MQ=255)                                                                                                                                aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAAc                   <  2:359983/150‑1 (MQ=255)                                                                                                                                   aCTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                <  1:474509/150‑1 (MQ=255)                                                                                                                                    cTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTc               <  1:107857/150‑1 (MQ=255)                                                                                                                                     tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                <  2:945104/148‑1 (MQ=255)                                                                                                                                     tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                >  1:945104/1‑148 (MQ=255)                                                                                                                                        aaGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAAc           <  2:544556/150‑1 (MQ=255)                                                                                                                                         aGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTGGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGACCg          >  1:668661/1‑150 (MQ=255)                                                                                                                                            aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga                                    <  2:1035140‑M2/121‑83 (MQ=255)                                                                                                                                            aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga                                    >  1:1035140‑M2/1‑39 (MQ=255)                                                                                                                                            aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTa       >  1:76885/1‑150 (MQ=255)                                                                                                                                            aCGCCTGGCAGCGCGCGAAGACAAAGTTCAGGCGCATGACAGGCTGCTGGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCGACCGCACGGGGCGCGAAACCTTCGAACGTTa       >  1:428363/1‑150 (MQ=255)                                                                                                                                              gCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTAcc     >  2:850605/1‑150 (MQ=255)                                                                                                                                                cTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctgatgatcgaaaccagcaactatagtcgccgctcgg   <  1:454668‑M1/150‑148 (MQ=255)                                                                                                                                                cTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctgatgatcgaaaccagcaactatagtcgccgctcgg   >  1:340260‑M1/1‑3 (MQ=255)                                                                                                                                                cTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGa   <  2:941255/150‑1 (MQ=255)                                                                                                                                                 tGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctgatgatcgaaaccagcaactatagtcgccgctcggg  >  2:275458‑M1/1‑2 (MQ=255)                                                                                                                                                 tGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgaggg                                         >  2:1078360‑M2/1‑34 (MQ=255)                                                                                                                                                 tGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgaggg                                         <  1:1078360‑M2/111‑78 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAG  >  NC_002947/4017533‑4017826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.