New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4017678	39 (0.860)	4 (0.090)	4/238	NT	9.4%	coding (69/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4017710	40 (0.920)					coding (101/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

CCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGA  >  NC_002947/4017563‑4017848                                                                                                                                                    |                                                                                                                                           cccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAca                                                                                                                                          >  2:275458‑M2/1‑148 (MQ=255)  ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcag                                                                                                                                         >  1:340260‑M2/1‑147 (MQ=255)  ccGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcag                                                                                                                                         <  1:454668‑M2/150‑4 (MQ=255)     aagggcgACTATAGTTGCTGGATTCGATCATCAGGCCCTCGTCAGGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGGGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct                                                                                                                                      <  2:117101/147‑1 (MQ=255)          cgACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg                                                                                                                                 <  2:291903/150‑1 (MQ=255)                         gTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGaca                                                                                                                  >  1:296261/1‑150 (MQ=255)                         gTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGaca                                                                                                                  >  2:474509/1‑150 (MQ=255)                            tCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGGCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca                                                                                                               <  2:808863/150‑1 (MQ=255)                               atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCg                                                                                                            >  1:501365/1‑150 (MQ=255)                                   tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCTACAACAGCGTGGc                                                                                                        <  2:412337/150‑1 (MQ=255)                                        cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACg                                                                                                   >  2:753540/1‑150 (MQ=255)                                         ccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgt                                                                                                  >  1:544556/1‑150 (MQ=255)                                           tCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                                                >  2:234386/1‑150 (MQ=255)                                               cATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc                                                                                            <  1:753540/150‑1 (MQ=255)                                                    aGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCg                                                                                       >  2:405337/1‑150 (MQ=255)                                                        aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCg                                                                                   >  1:945920/1‑150 (MQ=255)                                                         gATACGCTTGCGTCCTTTGCCCGAGTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgc                                                                                  >  2:107857/1‑150 (MQ=255)                                                          gtACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgca                                                                                 <  2:915121/149‑1 (MQ=255)                                                                  gCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATgcgc                                                                         <  1:405337/150‑1 (MQ=255)                                                                        tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                                                <  1:843575/121‑1 (MQ=255)                                                                        tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACgtgt                                                                                                >  2:843575/1‑121 (MQ=255)                                                                           gCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGcc                                                                >  1:359983/1‑150 (MQ=255)                                                                                   gCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCg                                                        >  1:941255/1‑150 (MQ=255)                                                                                       gcgcgcGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc                                                                                                    >  1:460832/1‑102 (MQ=255)                                                                                       gcgcgcGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc                                                                                                    <  2:460832/102‑1 (MQ=255)                                                                                           gcgTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGCCAACGTTCAGGTGCATGACAGGCTCCTTGGAGAACCGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGAACGCAGCATGCGCCTCTTGGACATCAACCGCACGgcgc                                                <  2:483622/150‑1 (MQ=255)                                                                                                  aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAAc                                         <  2:359983/150‑1 (MQ=255)                                                                                                     aCTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                                      <  1:474509/150‑1 (MQ=255)                                                                                                      cTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTc                                     <  1:107857/150‑1 (MQ=255)                                                                                                       tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                                      >  1:945104/1‑148 (MQ=255)                                                                                                       tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCtt                                      <  2:945104/148‑1 (MQ=255)                                                                                                          aaGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAAc                                 <  2:544556/150‑1 (MQ=255)                                                                                                           aGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTGGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGACCg                                >  1:668661/1‑150 (MQ=255)                                                                                                              aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga                                                          <  2:1035140‑M2/121‑83 (MQ=255)                                                                                                              aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga                                                          >  1:1035140‑M2/1‑39 (MQ=255)                                                                                                              aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTa                             >  1:76885/1‑150 (MQ=255)                                                                                                              aCGCCTGGCAGCGCGCGAAGACAAAGTTCAGGCGCATGACAGGCTGCTGGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCGACCGCACGGGGCGCGAAACCTTCGAACGTTa                             >  1:428363/1‑150 (MQ=255)                                                                                                                gCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTAcc                           >  2:850605/1‑150 (MQ=255)                                                                                                                  cTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGa                         <  2:941255/150‑1 (MQ=255)                                                                                                                   tGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgaggg                                                               >  2:1078360‑M2/1‑34 (MQ=255)                                                                                                                   tGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgaggg                                                               <  1:1078360‑M2/111‑78 (MQ=255)                                                                                                                     gCAGCGCGCGAAGACAACGTTCAGGCGCATGACATGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGc                      <  2:428363/150‑1 (MQ=255)                                                                                                                          gcgcgAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGt                 <  1:563842/150‑1 (MQ=255)                                                                                                                                    aaCGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGtt       >  1:838957/1‑150 (MQ=255)                                                                                                                                       gTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCAATCAAGCTCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGc    <  2:296261/150‑1 (MQ=255)                                                                                                                                         tCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGa  <  1:234386/150‑1 (MQ=255)                                                                                                                                           aGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgcagca                                                                              >  2:600803/1‑72 (MQ=255)                                                                                                                                           aGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgcagca                                                                              <  1:600803/72‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           CCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGA  >  NC_002947/4017563‑4017848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.