| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4237571 = | 29 (0.640) | 2 (0.050) | 4/234 | NT | 6.3% | coding (723/1122 nt) | catB | muconate cycloisomerase 1 |
| ? | NC_002947 | 4237600 = | 32 (0.750) | coding (694/1122 nt) | catB | muconate cycloisomerase 1 | |||||
TGGGACGAGTCCCAGGCCATCCGCGCCTGCCAGGTATTGGGCGACAACGGCATCGACCTGATCGAGCAGCCGATTTCGCGCATCAACCGCGCTGG‑C‑CAGGTGCGCCTGAACCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4237687‑4237571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGCTGTCACCCAGCTCGCGCTTGATCGCGAC > NC_002947/4237600‑4237747 TGGGACGAGTCCCAGGCCATCCGCGCCTGCCAGGTATTGGGCGACAACGGCATCGACCTGATCGAGCAGCCGATTTCGCGCATCAACCGCGCTGGTT‑CAGGCGCACCTG‑GCCAGCGCGGTTG < 1:661837/122‑1TGGGACGAGTCCCAGGCCATCCGCGCCTGCCAGGTATTGGGCGACAACGGCATCGACCTGATCGAGCAGCCGATTTCGCGCATCAACCGCGCTGG‑TTCAGGCGCACCTG‑GCCAGCGCGGTTG > 2:661837/1‑122 GCGCTGG‑C‑CAGGTGCGCCTGAACCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGG > 1:1191495/1‑106 GCGCTGG‑C‑CAGGTGCGCCTGAACCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGG < 2:1191495/106‑1 AGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGCTGTCACCCAGCTCGCGCTTGATCGC < 2:533747/150‑1 AGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAG < 1:58466/67‑1 AGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAG > 2:58466/1‑67 GCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGCTGTCACCCAGCTCGCGCTTGATCGCGAC < 1:154151/150‑1 GCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTG > 1:161196/1‑118 GCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTG < 2:161196/118‑1 TGGGACGAGTCCCAGGCCATCCGCGCCTGCCAGGTATTGGGCGACAACGGCATCGACCTGATCGAGCAGCCGATTTCGCGCATCAACCGCGCTGG‑C‑CAGGTGCGCCTGAACCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4237687‑4237571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGCTGTCACCCAGCTCGCGCTTGATCGCGAC > NC_002947/4237600‑4237747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |