New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4237571 =	29 (0.640)	2 (0.050)	4/234	NT	6.3%	coding (723/1122 nt)	catB	muconate cycloisomerase 1
	?	NC_002947	4237600 =	32 (0.750)					coding (694/1122 nt)	catB	muconate cycloisomerase 1

TCGGCGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGC  >  NC_002947/4237422‑4237719                                                                                                                                                      |                                                                                                                                                       tCGGCGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTg                                                                                                                                                        <  1:1146454/150‑1 (MQ=255)  gtcgcgatcaagcgcgagctgggtgacagcgccagcgtgcgggtcgacgtcaaccagtactgggacgagtcccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccgc                                                                                                                                                       <  1:154151‑M1/2‑1 (MQ=255)   ggCGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTgcg                                                                                                                                                      >  1:832270/1‑150 (MQ=255)    gCGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTgcgc                                                                                                                                                     >  1:400844/1‑150 (MQ=255)     gcgatcaagcgcgagctgggtgacagcgccagcgtgcgggtcgacgtcaaccagtactgggacgagtcccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccGCGCt                                                                                                                                                    <  2:533747‑M1/5‑1 (MQ=255)     cGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCt                                                                                                                                                    <  1:739740/150‑1 (MQ=255)              cAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGgc                                                                                                                                           <  2:327889/150‑1 (MQ=255)                         aCCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCa                                                                                                                              <  1:293764/150‑1 (MQ=255)                                 cgGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGtt                                                                                                                      <  1:751975/150‑1 (MQ=255)                                  cagcgtgcgggtcgacgtcaaccagtactgggacgagtcccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccgc                                                                                                                                                       >  1:161196‑M1/117‑118 (MQ=255)                                  cagcgtgcgggtcgacgtcaaccagtactgggacgagtcccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccgc                                                                                                                                                       <  2:161196‑M1/2‑1 (MQ=255)                                        ccaTTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATgcgc                                                                                                               <  1:1010126/150‑1 (MQ=255)                                        ccaTTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATgcgc                                                                                                               <  2:519539/150‑1 (MQ=255)                                         caTTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGcgcg                                                                                                              >  2:36414/1‑150 (MQ=255)                                         caTTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGcgcg                                                                                                              >  1:690275/1‑150 (MQ=255)                                                 gCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGgc                                                                                                      <  2:832270/150‑1 (MQ=255)                                                              cGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGt                                                                                         <  1:53776/150‑1 (MQ=255)                                                                  gATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGAt                                                                                     <  2:1054071/150‑1 (MQ=255)                                                                      cTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCg                                                                                 <  1:890451/150‑1 (MQ=255)                                                                         ccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccGCGCTGGTTCAGGCGCACCTG‑G‑CCAgcgc                                                                                                                          >  1:1191495‑M1/78‑106 (MQ=255)                                                                         ccaggccatccgcgcctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccGCGCTGGTTCAGGCGCACCTG‑G‑CCAgcgc                                                                                                                          <  2:1191495‑M1/29‑1 (MQ=255)                                                                                cGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCa                                                                       >  1:45345/1‑150 (MQ=255)                                                                                  tCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAAt                                                                     <  1:895415/150‑1 (MQ=255)                                                                                    ggcggcCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATAc                                                                   <  2:400844/150‑1 (MQ=255)                                                                                       ggcCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCgg                                                                                                                        >  1:550449/1‑94 (MQ=255)                                                                                       ggcCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCgg                                                                                                                        <  2:550449/94‑1 (MQ=255)                                                                                        ctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccGCGCt                                                                                                                                                    <  1:58466‑M1/5‑1 (MQ=255)                                                                                        ctgccaggtattgggcgacaacggcatcgacctgatcgagcagccgatttcgcgcatcaaccGCGCt                                                                                                                                                    >  2:58466‑M1/63‑67 (MQ=255)                                                                                               tGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGgcgc                                                        >  1:562043/1‑150 (MQ=255)                                                                                                gAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGcgcg                                                       >  2:429068/1‑150 (MQ=255)                                                                                                                  ttCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTc                                     <  2:45345/150‑1 (MQ=255)                                                                                                                       tcgaCTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACGAGTCCCAgg                                <  2:690275/150‑2 (MQ=255)                                                                                                                            tCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGgctgct                                                                                                  <  2:1185081/79‑1 (MQ=255)                                                                                                                            tCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGgctgct                                                                                                  >  1:1185081/1‑79 (MQ=255)                                                                                                                              aTCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGt                                                                                         <  1:415507/86‑1 (MQ=255)                                                                                                                              aTCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGt                                                                                         >  2:415507/1‑86 (MQ=255)                                                                                                                              aTCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTgg                           >  1:1017605/1‑148 (MQ=255)                                                                                                                              aTCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTgg                           <  2:1017605/148‑1 (MQ=255)                                                                                                                                    cATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTc                   >  1:1087464/1‑150 (MQ=255)                                                                                                                                     aTGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCg                  >  2:154151/1‑150 (MQ=255)                                                                                                                                           ggAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGc            <  1:36414/150‑1 (MQ=255)                                                                                                                                                 caaccGCGCTGGC‑CAGGTGCGCCTGAA‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCa                                  >  2:661837‑M1/6‑122 (MQ=255)                                                                                                                                                 caaccGCGCTGGC‑CAGGTGCGCCTG‑AACCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCa                                  <  1:661837‑M1/117‑1 (MQ=255)                                                                                                                                                  gACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTgg     >  1:533747/1‑150 (MQ=255)                                                                                                                                                   aCTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGgc    <  2:562043/150‑1 (MQ=255)                                                                                                                                                     tGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGgcgc  >  1:35858/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                       TCGGCGATCTGTGCAGTGCGCAGAACCGCGCGCGGGCCACCATTCTTGGCGATTTTCAGGGCGAAGATGCTGGCGGCGCCGTCGGCGGCCAGGCTGAAGGCGTCCTCGACGCTTTCGATCGACTCATCGGCCATGATCGGAGCCGGACTGCGCTGGTTCAGGCGCACCTG‑G‑CCAGCGCGGTTGATGCGCGAAATCGGCTGCTCGATCAGGTCGATGCCGTTGTCGCCCAATACCTGGCAGGCGCGGATGGCCTGGGACTCGTCCCAGTACTGGTTGACGTCGACCCGCACGCTGGCGC  >  NC_002947/4237422‑4237719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.