New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4397217 =	46 (1.020)	4 (0.090)	4/232	NT	9.6%	coding (67/552 nt)	PP_3875	hypothetical protein
	?	NC_002947	4397307 =	32 (0.760)					coding (306/327 nt)	PP_3876	hypothetical protein

CAGTGCAGCCGGCAAAGACAGCGGTGGTGATGACTCAAGCGCTGCGAGCAAGCCCGATGATTCGGCGGGCACTGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4397373‑4397217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCGG  >  NC_002947/4397307‑4397452                                                                                                                                                                                                                                                                                                                 CAGTGCAGCCGGCAAAGACAGCGGTGGTGATGACTCAAGCGCTGCGAGCAAGCCCGATGATTCGGCGGGCACTGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTT                                                                                                                                                           >  2:1128486/1‑150                                                                GGCGGGCACTGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTC                                                                                                 >  1:897867/1‑145                                                                GGCGGGCACTGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTC                                                                                                 <  2:897867/145‑1                                                                         TGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGA                                                                                                                   <  1:659668/118‑1                                                                         TGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGA                                                                                                                   >  2:659668/1‑118                                                                                                                                                  tctgttAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCTTTTGCCTGTTCCGGACTTGCCTTTCCTCGCCTACTTGCCCGCTTCCCTTTCCTAGCCCCCCTCGATCAc          <  2:186504/144‑2                                                                                                                                                       CAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTT     <  1:148449/150‑1                                                                                                                                                        AGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTC    >  2:772849/1‑150                                                                                                                                                         GTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCG   <  1:423845/150‑1                                                                                                                                                         GTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCG   >  2:423845/1‑150                                                                                                                                                          TGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCGG  <  2:910362/150‑1                                                                                                                                                          TGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCT                                               >  1:838708/1‑105                                                                                                                                                          TGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCT                                               <  2:838708/105‑1                                                                                                                                                            CCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCAC                                                                                   >  1:1200027/1‑67                                                                                                                                                            CCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCAC                                                                                   <  2:1200027/67‑1                                                                                                                                                                                                                                                                                                                 CAGTGCAGCCGGCAAAGACAGCGGTGGTGATGACTCAAGCGCTGCGAGCAAGCCCGATGATTCGGCGGGCACTGACGGCAAACCCTGATCATGGCTCGCCGGATCGCTTACACGGGGGAGCCCGTGTTGACGTTGGAGCAGGTTGCCTTTCAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4397373‑4397217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCGG  >  NC_002947/4397307‑4397452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.