New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4397217 =	46 (1.020)	4 (0.090)	4/232	NT	9.6%	coding (67/552 nt)	PP_3875	hypothetical protein
	?	NC_002947	4397307 =	32 (0.760)					coding (306/327 nt)	PP_3876	hypothetical protein

CTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCGG  >  NC_002947/4397163‑4397452                                                                                                                                                 |                                                                                                                                                  cTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGa                                                                                                                                              >  1:292075/1‑150 (MQ=255)    gacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCccgcc                                                                                                                                                <  2:897867‑M1/94‑1 (MQ=255)    gacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCccgcc                                                                                                                                                >  1:897867‑M1/52‑145 (MQ=255)             tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGACAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCtt                                                                                                                                  >  1:659307/1‑150 (MQ=255)             tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCtt                                                                                                                                  >  2:656189/1‑150 (MQ=255)                gattgatCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCt                                                                                                                               >  1:1195607/1‑150 (MQ=255)                  ttgatCAGCTCAGGCTGCATATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCg                                                                                                                             <  2:792027/150‑1 (MQ=255)                           tCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTg                                                                                                                    >  1:910362/1‑150 (MQ=255)                            cAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa                                                                                                                   <  1:753488/150‑1 (MQ=255)                            cAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa                                                                                                                   <  1:573125/150‑1 (MQ=255)                              ggCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGt                                                                                                                 >  2:148449/1‑150 (MQ=255)                                cTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGtca                                                                                                               >  1:560597/1‑150 (MQ=255)                                    aGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATcac                                                                                                           <  2:1029880/150‑1 (MQ=255)                                         ttctGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCg                                                                                                      >  1:1128486/1‑150 (MQ=255)                                             ggTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGt                                                                                                  >  2:762890/1‑150 (MQ=255)                                                   ggcgggcactgacggcaaaccctgatcatggctcgccggatcgcttacacgggggagcccgtgttgacgttggagcaggttgcctttcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTc                                                                                                 <  2:897867‑M2/51‑1 (MQ=255)                                                   ggcgggcactgacggcaaaccctgatcatggctcgccggatcgcttacacgggggagcccgtgttgacgttggagcaggttgcctttcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTc                                                                                                 >  1:897867‑M2/95‑145 (MQ=255)                                                            tgacggcaaaccctgatcatggctcgccggatcgcttacacgggggagcccgtgttgacgttggagcaggttgcctttcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa                                                                                                                   <  1:659668‑M2/33‑1 (MQ=255)                                                            tgacggcaaaccctgatcatggctcgccggatcgcttacacgggggagcccgtgttgacgttggagcaggttgcctttcagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa                                                                                                                   >  2:659668‑M2/86‑118 (MQ=255)                                                              AAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTg                                                                                 >  2:1128486‑M1/1‑150 (MQ=255)                                                                     aCCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGcactgccactgc                                                                          <  2:1195607/150‑1 (MQ=255)                                                                      ccTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGcactgc                                                                                <  2:978109/143‑1 (MQ=255)                                                                      ccTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGcactgc                                                                                >  1:978109/1‑143 (MQ=255)                                                                       cTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCt                                                                        <  2:292075/150‑1 (MQ=255)                                                                               aCGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGa                                                                <  1:656189/150‑1 (MQ=255)                                                                                 gTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACt                                                              >  1:1134924/1‑150 (MQ=255)                                                                                    aaCACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGc                                                           >  1:266962/1‑150 (MQ=255)                                                                                                cccGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCt                                               >  1:196234/1‑150 (MQ=255)                                                                                                      tAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGc                                         >  2:492678/1‑150 (MQ=255)                                                                                                        aGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTttc                                                      >  2:1139046/1‑135 (MQ=255)                                                                                                        aGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTttc                                                      <  1:1139046/135‑1 (MQ=255)                                                                                                            aTCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCtt                                   <  1:762890/150‑1 (MQ=255)                                                                                                                 gCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTg                              >  1:278896/1‑150 (MQ=255)                                                                                                                        aTGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGc                       >  2:228812/1‑150 (MQ=255)                                                                                                                          gATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGccc                     <  2:1134924/150‑1 (MQ=255)                                                                                                                            tCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGc                                <  2:343644/137‑1 (MQ=255)                                                                                                                            tCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGc                                >  1:343644/1‑137 (MQ=255)                                                                                                                                ggTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCg               >  1:112457/1‑150 (MQ=255)                                                                                                                                 gTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGa              <  2:662493/150‑1 (MQ=255)                                                                                                                                     tctgttagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCTTTTGCCTGTTCCGGACTTGCCTTTCCTCGCCTACTTGCCCGCTTCCCTTTCCTAGCCCCCCTCGATcac          <  2:186504‑M2/138‑2 (MQ=255)                                                                                                                                       cGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTACCGGCATAGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATc        >  1:872375/1‑150 (MQ=255)                                                                                                                                        gTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATcc       >  1:202829/1‑150 (MQ=255)                                                                                                                                          cagtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCtt     <  1:148449‑M2/143‑1 (MQ=255)                                                                                                                                           agtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTc    >  2:772849‑M2/7‑150 (MQ=255)                                                                                                                                            gtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCg   >  2:423845‑M2/6‑150 (MQ=255)                                                                                                                                            gtgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCg   <  1:423845‑M2/145‑1 (MQ=255)                                                                                                                                             tgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCt                                               <  2:838708‑M2/101‑1 (MQ=255)                                                                                                                                             tgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCt                                               >  1:838708‑M2/5‑105 (MQ=255)                                                                                                                                             tgccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCgg  <  2:910362‑M2/146‑1 (MQ=255)                                                                                                                                               ccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGcac                                                                                   >  1:1200027‑M2/3‑67 (MQ=255)                                                                                                                                               ccCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGcac                                                                                   <  2:1200027‑M2/65‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGTCTTTGCCGGCTGCACTGCCACTGCCTGTTCCGGACTTGCCTTTCTTCGCCTGCTTGCCCGCTTCGCTGGCATAGCCCGCCTCGATCAATCCTTCGG  >  NC_002947/4397163‑4397452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.