| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4397217 = | 46 (1.020) | 4 (0.090) | 4/232 | NT | 9.6% | coding (67/552 nt) | PP_3875 | hypothetical protein |
| ? | NC_002947 | 4397307 = | 32 (0.760) | coding (306/327 nt) | PP_3876 | hypothetical protein | |||||
GTGGCCTGCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGT > NC_002947/4397071‑4397356 | gTGGCCTGCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCa < 2:320406/150‑1 (MQ=255)gTGGCCTGCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCa < 1:551516/150‑1 (MQ=255)ccgaaggattgatcgaggcgggctatgccagcgaagcgggcaagcaggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCa < 2:910362‑M1/4‑1 (MQ=255) cgaaggattgatcgaggcgggctatgccagcgaagcgggcaagcaggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCAc > 2:423845‑M1/146‑150 (MQ=255) cgaaggattgatcgaggcgggctatgccagcgaagcgggcaagcaggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCAc < 1:423845‑M1/5‑1 (MQ=255) ggCCTGCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCCCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACt < 1:1037644/150‑1 (MQ=255) gaaggattgatcgaggcgggctatgccagcgaagcgggcaagcaggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACt > 2:772849‑M1/145‑150 (MQ=255) aaggattgatcgaggcgggctatgccagcgaagcgggcaagcaggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACTg < 1:148449‑M1/7‑1 (MQ=255) gCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAg < 2:232029/150‑1 (MQ=255) gtgatcgaggggggctaggaaagggaagcgggcaagtaggcgaggaaaggcaagtccggaacaggcaaaagcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgggcactaacaga < 2:186504‑M1/12‑7 (MQ=255) aTAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAAc < 2:844642/150‑1 (MQ=255) ggCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAAc < 1:667757/150‑1 (MQ=255) cttcttCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAaca < 1:902192/150‑1 (MQ=255) ttcGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACt < 2:925303/119‑1 (MQ=255) ttcGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACt > 1:925303/1‑119 (MQ=255) ttcGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACggg > 2:753488/1‑150 (MQ=255) ttcGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACggg < 1:808104/150‑1 (MQ=255) aGCCGCGCGTTTTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCgt < 2:733980/150‑1 (MQ=255) aggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCa < 2:838708‑M1/4‑1 (MQ=255) aggcgaagaaaggcaagtccggaacaggcagtggcagtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCa > 1:838708‑M1/102‑105 (MQ=255) gTATTGCCGCGCTCGTCCTCGACTCGTCTTGTGCTGTAACGCCGGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCGGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCTAACGTCAACACGGGCTCCCCCGTGTAAGCGa < 2:524796/150‑1 (MQ=255) gTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGa > 1:186504/1‑150 (MQ=255) cTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATc < 1:383371/150‑1 (MQ=255) tCGACTCGGCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCa < 2:1055691/150‑1 (MQ=255) tCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCAt < 1:1090467/145‑1 (MQ=255) tCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCAt > 2:1090467/1‑145 (MQ=255) gACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTTGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAgg < 1:443288/150‑1 (MQ=255) cTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGt < 1:375248/150‑1 (MQ=255) gtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcggg < 2:1200027‑M1/2‑1 (MQ=255) gtgcagccggcaaagacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcggg > 1:1200027‑M1/66‑67 (MQ=255) tGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTg > 1:1029880/1‑150 (MQ=255) cTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGa > 1:292075/1‑150 (MQ=255) gacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCccgcc > 1:897867‑M1/52‑145 (MQ=255) gacagcggtggtgatgactcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCccgcc < 2:897867‑M1/94‑1 (MQ=255) atgatgatCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTccccc < 2:1110203/93‑1 (MQ=255) atgatgatCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTccccc > 1:1110203/1‑93 (MQ=255) gatgatCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTc < 2:1156567/69‑1 (MQ=255) gatgatCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTc > 1:1156567/1‑69 (MQ=255) tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGACAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCtt > 1:659307/1‑150 (MQ=255) tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATc < 2:623888/98‑1 (MQ=255) tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATc > 1:623888/1‑98 (MQ=255) tCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCtt > 2:656189/1‑150 (MQ=255) gattgatCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCt > 1:1195607/1‑150 (MQ=255) ttgatCAGCTCAGGCTGCATATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCg < 2:792027/150‑1 (MQ=255) tcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCa > 2:659668‑M1/34‑118 (MQ=255) tcaagcgctgcgagcaagcccgatgattcggcgGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCa < 1:659668‑M1/85‑1 (MQ=255) tCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCgt > 2:244296/1‑79 (MQ=255) tCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCgt > 2:244294/1‑79 (MQ=255) tCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCgt < 1:244294/79‑1 (MQ=255) tCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCgt < 1:244296/79‑1 (MQ=255) tCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTg > 1:910362/1‑150 (MQ=255) cAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa < 1:573125/150‑1 (MQ=255) cAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGa < 1:753488/150‑1 (MQ=255) ggCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGt > 2:148449/1‑150 (MQ=255) cTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGa > 2:480811/1‑85 (MQ=255) cTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGa < 1:480811/85‑1 (MQ=255) cTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGtca > 1:560597/1‑150 (MQ=255) aGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATcac < 2:1029880/150‑1 (MQ=255) ttctGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCg > 1:1128486/1‑150 (MQ=255) ggTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGt > 2:762890/1‑150 (MQ=255) gTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTg < 2:682925/88‑1 (MQ=255) gTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTg > 1:682925/1‑88 (MQ=255) | GTGGCCTGCGGGATAGTGCGCCGGCCAATCTTCTTCGTAGCGAGCCTCTCGTATTGCCGCGCCCGTCCTCGACTCGCCTTGTGCTGTAACGCCTGGGATGATGATCTGATTGATCAGCTCAGGCTGCAGATCTTCTGGTTCAGCGCGGCACTGAAAGGCAACCTGCTCCAACGTCAACACGGGCTCCCCCGTGTAAGCGATCCGGCGAGCCATGATCAGGGTTTGCCGTCAGTGCCCGCCGAATCATCGGGCTTGCTCGCAGCGCTTGAGTCATCACCACCGCTGT > NC_002947/4397071‑4397356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |