| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4408241 | 42 (0.930) | 5 (0.120) | 5/238 | NT | 10.1% | coding (87/444 nt) | PP_3890 | hypothetical protein |
| ? | NC_002947 | = 4408301 | 49 (1.130) | coding (27/444 nt) | PP_3890 | hypothetical protein | |||||
ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4408092‑4408241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTTACAAACTGATCTACCACGTCCCGAACGGTGGGCAC < NC_002947/4408301‑4408157 ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC > 1:299420/1‑150ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC > 1:428567/1‑150 CTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAG < 2:299420/150‑1 GGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAG > 2:1068161/1‑150 TGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCA < 1:1068161/150‑1 CCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAG < 1:652519/108‑1 CCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAG > 2:652519/1‑108 GCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTTACAAACTGATCTACCACGTCCCGAACGGTGGGCAC > 2:914393/1‑150 ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4408092‑4408241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTTACAAACTGATCTACCACGTCCCGAACGGTGGGCAC < NC_002947/4408301‑4408157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |