| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4408241 | 42 (0.930) | 5 (0.120) | 5/238 | NT | 10.1% | coding (87/444 nt) | PP_3890 | hypothetical protein |
| ? | NC_002947 | = 4408301 | 49 (1.130) | coding (27/444 nt) | PP_3890 | hypothetical protein | |||||
GTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGCGACGACGAGCACGCA > NC_002947/4408157‑4408449 | gTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagc > 2:914393‑M2/1‑145 (MQ=255) cACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCa < 1:717081/150‑1 (MQ=255) aCCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCAt > 1:704000/1‑150 (MQ=255) gggACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAgctcgc > 2:1022804/1‑150 (MQ=255) gggACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAgctcgc < 1:796383/150‑1 (MQ=255) ggACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAgctcgct > 2:450698/1‑150 (MQ=255) gTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTcccc < 2:519506/150‑1 (MQ=255) gATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGa > 2:186922/1‑150 (MQ=255) tCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATa < 2:180421/150‑1 (MQ=255) ccTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGcc < 2:742139/150‑1 (MQ=255) ggTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGc > 1:98079/1‑150 (MQ=255) gTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCa > 1:1189622/1‑150 (MQ=255) tAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCAt < 2:1181384/150‑1 (MQ=255) aGCGCAGCTTCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGTCGAAGGGCCGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATc < 1:369783/150‑1 (MQ=255) aGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATc < 1:648907/150‑1 (MQ=255) gcagctgcagctCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGc > 2:1169534/1‑150 (MQ=255) ctgcagctCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAAtt < 1:324810/150‑1 (MQ=255) gcagctCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGc < 1:76246/150‑1 (MQ=255) gctCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCcac < 1:450698/150‑1 (MQ=255) tCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACaa > 1:44375/1‑150 (MQ=255) gCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGt < 2:992226/150‑1 (MQ=255) ccTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAaggagtc > 1:1122707/1‑148 (MQ=255) tGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagcaggctgcgctgatgcaggagctgcagctgcgctacccgcaggcttacaaactgatctaccacgtcccgaacggtgggca < 1:1068161‑M2/150‑85 (MQ=255) cTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagcaggctgcgctgatgcaggagctgcagctgcgctacccgcaggcttacaaactgatctaccacgtcccgaacggtgggcacc > 2:1068161‑M2/1‑64 (MQ=255) cTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGtt < 1:1022804/150‑1 (MQ=255) tCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAaggagg < 1:237005/144‑1 (MQ=255) tCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAaggagg > 2:237005/1‑144 (MQ=255) cTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagcaggctgcgctgatgcaggagctgcagctgcgctacccgcagg < 1:652519‑M2/108‑48 (MQ=255) cTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagcaggctgcgctgatgcaggagctgcagctgcgctacccgcagg > 2:652519‑M2/1‑61 (MQ=255) cccTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCAAACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGcgtcg > 1:204953/1‑150 (MQ=255) cTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGggagcaggctgcgctgatgcaggagctgcagctgcgctacccgcaggcttacaaactgatctaccacgtcccgaacggtgggcaccggatcaag < 2:299420‑M2/150‑95 (MQ=255) ttCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCca < 2:999649/118‑1 (MQ=255) ttCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCca > 1:999649/1‑118 (MQ=255) tCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAg < 2:1189622/150‑1 (MQ=255) cGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCgg < 2:853717/135‑1 (MQ=255) cGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCgg > 1:853717/1‑135 (MQ=255) cGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGc > 2:594436/1‑150 (MQ=255) tggatgggCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCTAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGa < 2:477715/145‑1 (MQ=255) tCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATCGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGa < 2:704000/150‑1 (MQ=255) gCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCGTAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGc > 2:661876/1‑150 (MQ=255) tGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTg < 2:282578/150‑1 (MQ=255) gcggcgcggcTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCaa > 1:299628/1‑150 (MQ=255) gcggcgcggcTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCaa > 2:707092/1‑150 (MQ=255) gcgcggcTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAgg < 1:186922/150‑1 (MQ=255) cggcTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGcc > 2:1079874/1‑150 (MQ=255) ttGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGc < 2:426099/85‑1 (MQ=255) ttGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGc > 1:426099/1‑85 (MQ=255) tGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGaa < 2:428567/150‑1 (MQ=255) gCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACa > 1:247610/1‑150 (MQ=255) ccTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAgc > 2:1113596/1‑150 (MQ=255) cTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAgcg > 1:130136/1‑150 (MQ=255) gtaaTGGTCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAgcgc > 2:1108170/3‑150 (MQ=255) gAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGaa < 1:675653/92‑1 (MQ=255) gAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGaa > 2:675653/1‑92 (MQ=255) gCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGcgacgacg > 1:906136/1‑150 (MQ=255) cGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGcgacgacga < 2:906136/150‑1 (MQ=255) ggCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGCGACGACGAgcacg > 2:1082689/1‑150 (MQ=255) cGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGCGACGACGAgcacgca < 2:247610/150‑1 (MQ=255) gggAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGtt < 2:1101130/87‑1 (MQ=255) gggAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGtt > 1:1101130/1‑87 (MQ=255) | GTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCTGCCCTTCCCGGTCGACGGGCTTGGCGCGGCGCGGCTTGGCCCTGAATGGGCGAAGGGCGGGAGCGTTCATAGCTCGCTCCCCCACAGATAGCCGACGAGGCCCATAGCATCAGCAATTGCCACAATCGTCCAGAAGGAGGCGGTTGCGTCGTGAGGGCCGACTCCTGCTTGGCAAAGGGCCGCGAACAGCGCGACGACGAGCACGCA > NC_002947/4408157‑4408449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |