| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4593801 = | 74 (1.640) | 4 (0.110) | 4/202 | NT | 6.6% | intergenic (+61/+238) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
| ? | NC_002947 | 4593905 = | 53 (1.440) | intergenic (+165/+134) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator | |||||
CGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4593972‑4593801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCA > NC_002947/4593905‑4594051 CGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTT < 1:612222/150‑1 GCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTT < 1:506618/150‑1 GGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGATTACCCGCGAATACGGTAGCGGCAGCAAACCTGAGGCAGGTGTATAGATTGGCCAGCAGGCCCGGCCCTTTCG > 1:1172705/1‑150 CCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTGGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAA > 1:836184/1‑150 CCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAA < 1:680374/150‑1 cgtTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAAC < 1:46452/147‑1 CGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAAC < 1:217097/150‑1 GCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACC > 2:1081179/1‑150 TCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCG > 1:721562/1‑150 CCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGC < 2:1050572/150‑1 CCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGAACGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGC < 1:378297/150‑1 CTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCT > 1:8141/1‑150 TACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTC > 2:417798/1‑150 ACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTA > 1:7897/1‑150 ACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTA > 2:1157179/1‑150 GGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGG > 1:933676/1‑85 GGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGG < 2:933676/85‑1 TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTT > 1:321410/1‑118 TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTT < 2:321410/118‑1 CCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGC > 1:255581/1‑124 CCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGC < 2:255581/124‑1 CGGGTAAACCCCCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGCTTAGGCGCAGCCCGCGCGTAGGAGCGCGTTTACCCGCGAAAGGCCCGGCCCTGCTGGCCCACTTCCACCCGCCGTTCACCGTTGCCGCCACTCCTCAAACC < 2:378297/150‑1 TAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCTTTGCCGCCACTACTCAAACCCTTT < 1:886216/150‑1 TAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTT < 1:498510/150‑1 CCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAA < 2:797208/150‑1 CGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAA < 2:760099/150‑1 TACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCA < 1:1050572/150‑1 CGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4593972‑4593801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCA > NC_002947/4593905‑4594051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |