New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4604457 =	31 (0.690)	6 (0.140)	6/232	NT	16.4%	coding (241/411 nt)	PP_4076	hypothetical protein
	?	NC_002947	4604496 =	32 (0.760)					coding (280/411 nt)	PP_4076	hypothetical protein

TGTAGCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4604613‑4604457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG  >  NC_002947/4604496‑4604642                                                                                                                                                                                                                                                                                                                   TGTAGCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCG‑GTT                                                                                                                                                            <  1:727635/150‑1     GCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAA                                                                                                                                                        <  2:645851/150‑1                                                                                                                        GCTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAA                                                >  1:706379/1‑139                                                                                                                        GCTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAA                                                <  2:706379/139‑1                                                                                                                         CTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGA                                                            <  1:245200/126‑1                                                                                                                         CTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGA                                                            >  2:245200/1‑126                                                                                                                               GCGCGCGCACGTGGATGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGT                                                                                                <  1:593495/85‑1                                                                                                                               GCGCGCGCACGTGGATGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGT                                                                                                >  2:593495/1‑85                                                                                                                                                       TCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCAC       >  1:481480/1‑150                                                                                                                                                            GCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG  >  1:638457/1‑150                                                                                                                                                                                                                                                                                                                   TGTAGCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCG‑GTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4604613‑4604457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG  >  NC_002947/4604496‑4604642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.