New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4604457 =	31 (0.690)	6 (0.140)	6/232	NT	16.4%	coding (241/411 nt)	PP_4076	hypothetical protein
	?	NC_002947	4604496 =	32 (0.760)					coding (280/411 nt)	PP_4076	hypothetical protein

TCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG  >  NC_002947/4604352‑4604642                                                                                                                                                 |                                                                                                                                                   tCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCg                                                                                                                                               <  1:484851/150‑1 (MQ=255)     agagCAGCCGCGAGCTGGGCGTGCGCGACTTAAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGAtt                                                                                                                                           <  2:372310/150‑1 (MQ=255)     agagCAGCCCCGAGCTGGGCCTGCGCTACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGAtt                                                                                                                                           >  1:27037/1‑150 (MQ=255)      gagCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTg                                                                                                                                          <  2:139451/150‑1 (MQ=255)                    tGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTAAGAGCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTgg                                                                                                                            >  1:318414/1‑150 (MQ=255)                     gggCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGa                                                                                                                           >  2:1130388/1‑150 (MQ=255)                      ggCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGaa                                                                                                                          <  1:1130388/150‑1 (MQ=255)                        ccTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGAGGTAGCGGATTGTCACGCCCCGTTGGAACt                                                                                                                        >  2:1183444/1‑150 (MQ=255)                            cgcgACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCAt                                                                                                                    <  1:418515/150‑1 (MQ=255)                                  ttCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAgg                                                                                                              >  1:705149/1‑150 (MQ=255)                                             tGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCAGCCACGTGCGCGCTCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCa                                                                                                   <  1:588168/150‑1 (MQ=255)                                              gACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAg                                                                                                  >  2:687457/1‑150 (MQ=255)                                                 gTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTg                                                                                               >  2:741017/1‑150 (MQ=255)                                                 gTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACACCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTg                                                                                               >  1:511271/1‑150 (MQ=255)                                                    agcagcGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACGCTCCAGCGCTTTGAACCGCGCATCCCCGTGCGCGCGCTCAAAGCGGTACGGGATTGTCACGCCGCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAg                                                                                            <  1:1183444/150‑1 (MQ=255)                                                      cagcGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGt                                                                                          <  1:741017/150‑1 (MQ=255)                                                             gACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGACCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCaacaac                                                                                   <  1:578422/150‑1 (MQ=255)                                                                 tgctgcAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGTCTGCCAAGTGCAGGTCAACAACCAgg                                                                               <  1:1068877/150‑1 (MQ=255)                                                                   ctgcAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCa                                                                             >  1:446493/1‑150 (MQ=255)                                                                      cagcaAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGtt                                                                                                                              >  1:1015445/1‑98 (MQ=255)                                                                      cagcaAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGtt                                                                                                                              <  2:1015445/98‑1 (MQ=255)                                                                                    cGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTTCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGa                                                            >  2:440569/1‑150 (MQ=255)                                                                                     gATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCTGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAg                                                           >  1:990250/1‑150 (MQ=255)                                                                                                  cccTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACg                                              <  2:27037/150‑1 (MQ=255)                                                                                                      ccAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGaca                                          >  2:1125438/1‑150 (MQ=255)                                                                                                           gctttgagcgcgcgcacgtggatgcgcggttcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTaaa                                                >  1:706379‑M2/39‑139 (MQ=255)                                                                                                           gctttgagcgcgcgcacgtggatgcgcggttcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTaaa                                                <  2:706379‑M2/101‑1 (MQ=255)                                                                                                            ctttgagcgcgcgcacgtggatgcgcggttcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGa                                                            <  1:245200‑M2/89‑1 (MQ=255)                                                                                                            ctttgagcgcgcgcacgtggatgcgcggttcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGa                                                            >  2:245200‑M2/38‑126 (MQ=255)                                                                                                             TTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGc                                   <  2:645851‑M1/150‑1 (MQ=255)                                                                                                                 gcgcgcgcacgtggatgcgcgcgctcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGt                                                                                                >  2:593495‑M2/33‑85 (MQ=255)                                                                                                                 gcgcgcgcacgtggatgcgcgcgctcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGt                                                                                                <  1:593495‑M2/53‑1 (MQ=255)                                                                                                                 AACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTaca                               <  1:727635‑M1/150‑1 (MQ=255)                                                                                                                       gcATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAg                         <  1:645851/150‑1 (MQ=255)                                                                                                                          tCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTACAGCGTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGa                      >  1:560339/1‑150 (MQ=255)                                                                                                                           ccACGTGCGCGCGCTCAAAGCGGTACCTGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAg                     <  2:990250/150‑1 (MQ=255)                                                                                                                           ccACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAg                     <  2:839748/150‑1 (MQ=255)                                                                                                                           ccACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACACCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAg                     <  2:511271/150‑1 (MQ=255)                                                                                                                               gTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGa                 <  1:242762/150‑1 (MQ=255)                                                                                                                                  cgcgcgcTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGAccc              <  2:705149/150‑1 (MQ=255)                                                                                                                                     gcgcTCAACGCGGTCCCGGATTGGCACGCCCCGTTGGAACTGCATTTCAGGCTAGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATg           <  2:560339/150‑1 (MQ=255)                                                                                                                                     gcgcTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATg           >  1:726048/1‑150 (MQ=255)                                                                                                                                         tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCAc       >  1:481480‑M2/9‑150 (MQ=255)                                                                                                                                              gcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAg  >  1:638457‑M2/4‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAACCGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG  >  NC_002947/4604352‑4604642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.