| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4604457 = | 31 (0.690) | 6 (0.140) | 6/232 | NT | 16.4% | coding (241/411 nt) | PP_4076 | hypothetical protein |
| ? | NC_002947 | 4604496 = | 32 (0.760) | coding (280/411 nt) | PP_4076 | hypothetical protein | |||||
AAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACA > NC_002947/4604310‑4604602 | cttcagtgacatgggtcacctcactcgggtgtagcggttgtgtccgtttaccagcagctcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGc > 1:638457‑M1/148‑150 (MQ=255) gTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCtt < 1:737498/150‑1 (MQ=255) gtgacatgggtcacctcactcgggtgtagcggttgtgtccgtttaccagcagctcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGa > 1:481480‑M1/143‑150 (MQ=255) gCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTgcgcgcg > 1:139451/1‑150 (MQ=255) cTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTgcgcgcgc < 1:1015435/150‑1 (MQ=255) gCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCa > 2:418515/1‑150 (MQ=255) tCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCg < 1:484851/150‑1 (MQ=255) tttaccagcagctcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGc < 2:706379‑M1/38‑1 (MQ=255) tttaccagcagctcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGc > 1:706379‑M1/102‑139 (MQ=255) agagCAGCCGCGAGCTGGGCGTGCGCGACTTAAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGAtt < 2:372310/150‑1 (MQ=255) agagCAGCCCCGAGCTGGGCCTGCGCTACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGAtt > 1:27037/1‑150 (MQ=255) gagCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTg < 2:139451/150‑1 (MQ=255) ccGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTgcgcgcgc > 2:1058009/1‑123 (MQ=255) ccGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTgcgcgcgc < 1:1058009/123‑1 (MQ=255) tcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAg < 1:245200‑M1/37‑1 (MQ=255) tcaagctgcaactgctctgcctggttgttgacctgcacctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAg > 2:245200‑M1/90‑126 (MQ=255) tGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTAAGAG‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTgg > 1:318414/1‑150 (MQ=255) gggCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGa > 2:1130388/1‑150 (MQ=255) ggCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGaa < 1:1130388/150‑1 (MQ=255) ccTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGAGGTAGCGGATTGTCACGCCCCGTTGGAACt > 2:1183444/1‑150 (MQ=255) cgcgACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCAt < 1:418515/150‑1 (MQ=255) gcgACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCg > 2:28886/1‑116 (MQ=255) gcgACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCg < 1:28886/116‑1 (MQ=255) ttCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAgg > 1:705149/1‑150 (MQ=255) tGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCAGCCACGTGCGCGCTCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCa < 1:588168/150‑1 (MQ=255) gACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAg > 2:687457/1‑150 (MQ=255) gTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTg > 2:741017/1‑150 (MQ=255) gTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACACCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTg > 1:511271/1‑150 (MQ=255) agcagcGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACGCTCCAGCGCTTTGAAC‑CGCGCATCCCCGTGCGCGCGCTCAAAGCGGTACGGGATTGTCACGCCGCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAg < 1:1183444/150‑1 (MQ=255) acctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAGCGCGCGCATCCACGTgcgcgcgc < 1:593495‑M1/32‑1 (MQ=255) acctggcagtcgagcctgaaatgcagttccaacggggcgtgacaatccggtacCGCTTTGAGCGCGCGCATCCACGTgcgcgcgc > 2:593495‑M1/54‑85 (MQ=255) cagcGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGt < 1:741017/150‑1 (MQ=255) gACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGACCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCaacaac < 1:578422/150‑1 (MQ=255) tgctgcAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGTCTGCCAAGTGCAGGTCAACAACCAgg < 1:1068877/150‑1 (MQ=255) ctgcAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCa > 1:446493/1‑150 (MQ=255) cagcaAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGtt < 2:1015445/98‑1 (MQ=255) cagcaAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGtt > 1:1015445/1‑98 (MQ=255) cGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTTCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGa > 2:440569/1‑150 (MQ=255) gATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCTGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAg > 1:990250/1‑150 (MQ=255) cccTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACg < 2:27037/150‑1 (MQ=255) ccAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGaca > 2:1125438/1‑150 (MQ=255) | AAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAGCGCTTTGAAC‑CGCGCATCCACGTGCGCGCGCTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACA > NC_002947/4604310‑4604602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |