| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4983887 = | 19 (0.420) | 5 (0.120) | 4/232 | NT | 23.9% | intergenic (‑289/+33) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase |
| ? | NC_002947 | 4983915 = | 14 (0.330) | intergenic (‑317/+5) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase | |||||
ACAGTACCCTCAAGCCCGGTGGCTACCTGTTCCTCGGCGCCTCGGAAGCGCTGAACGGCTTGCCGGACCATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGCCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4984038‑4983887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACTGTGAATGCGCAGCAGGATGTCC > NC_002947/4983915‑4984058 ACAGTACCCTCAAGCCCGGTGGCTACCTGTTCCTCGGCGCCTCGGAAGCGCTGAACGGCTTGCCGGACCATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGCCGGCC > 1:141107/1‑150 GGACCATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGC > 1:101241/1‑81 GGACCATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGC < 2:101241/81‑1 CATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGCCG > 1:253762/1‑79 CATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGCCG < 2:253762/79‑1 ACGAAGGCCGGTATCGAGAGATGCCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAA > 1:337801/1‑85 ACGAAGGCCGGTATCGAGAGATGCCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAA < 2:337801/85‑1 GCCGGTATCGAGAGATGCCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACTGTG > 1:298851/1‑150 GCCGGTATCGAGAGATGCCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACT > 1:1156402/1‑65 GCCGGTATCGAGAGATGCCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACT < 2:1156402/65‑1 GGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACCGTGAATGCGCAGCAGGATGTCC > 2:473256/1‑150 CTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCAC > 1:340186/1‑109 CTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCAC < 2:340186/109‑1 ACAGTACCCTCAAGCCCGGTGGCTACCTGTTCCTCGGCGCCTCGGAAGCGCTGAACGGCTTGCCGGACCATTACCAGATGGTGCAGTGCAGCCCGGGGATCATCTACCAGGCCAAGTAAGCACGAAGGCCGGTATCGAGAGATGCCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4984038‑4983887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACTGTGAATGCGCAGCAGGATGTCC > NC_002947/4983915‑4984058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |