New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4983887 =	19 (0.420)	5 (0.120)	4/232	NT	23.9%	intergenic (‑289/+33)	flgB/cheR	flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase
	?	NC_002947	4983915 =	14 (0.330)					intergenic (‑317/+5)	flgB/cheR	flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase

TGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACTGTGAATGCGCAGCAGGATGTCCTTCT  >  NC_002947/4983767‑4984062                                                                                                                                                     |                                                                                                                                                    tGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCg                                                                                                                                                    >  1:94177/1‑150 (MQ=255)                gcggcaaaaCAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg                                                                                                                                     <  2:669055/150‑1 (MQ=255)                                ttGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCggg                                                                                                                     <  1:1012826/150‑1 (MQ=255)                                  gACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGct                                                                                                                   <  2:385532/150‑1 (MQ=255)                                     gTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTACACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgca                                                                                                                <  1:819376/150‑1 (MQ=255)                                               tCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATc                                                                                                      >  2:756191/1‑150 (MQ=255)                                                 cTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTg                                                                                                    >  2:141107/1‑150 (MQ=255)                                                       tctccTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGTATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGATAACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATg                                                                                              <  1:30744/147‑1 (MQ=255)                                                           ctctTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGTATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCCACATCTAGTAAttgaga                                                                                          >  2:30744/1‑145 (MQ=255)                                                                   ttaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGCCTTCGt                                                                                                                                                   >  1:337801‑M1/55‑85 (MQ=255)                                                                   ttaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGCCTTCGt                                                                                                                                                   <  2:337801‑M1/31‑1 (MQ=255)                                                                                 cTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa                                                                                                <  2:985161/122‑1 (MQ=255)                                                                                 cTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa                                                                                                >  1:985161/1‑122 (MQ=255)                                                                                     ggggAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGgc                                                                >  1:558852/1‑150 (MQ=255)                                                                                            tCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAgg                                                         >  1:294947/1‑150 (MQ=255)                                                                                            tCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAgg                                                         >  1:1137449/1‑150 (MQ=255)                                                                                              ggCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGaa                                                       >  2:715122/1‑150 (MQ=255)                                                                                                                      acgaaggccggtatcgagagatgccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa                                                                                                >  1:337801‑M2/32‑85 (MQ=255)                                                                                                                      acgaaggccggtatcgagagatgccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa                                                                                                <  2:337801‑M2/54‑1 (MQ=255)                                                                                                                           GGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACtgt                          >  1:141107‑M1/1‑150 (MQ=255)                                                                                                                            gccggtatcgagagatgccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcact                                                                                                              <  2:1156402‑M2/40‑1 (MQ=255)                                                                                                                            gccggtatcgagagatgccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcact                                                                                                              >  1:1156402‑M2/26‑65 (MQ=255)                                                                                                                            gccggtatcgagagatgccggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACtgtg                         >  1:298851‑M2/26‑150 (MQ=255)                                                                                                                              CGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATg                                                                                              <  2:253762‑M1/79‑1 (MQ=255)                                                                                                                              CGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATg                                                                                              >  1:253762‑M1/1‑79 (MQ=255)                                                                                                                                GCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTcc                                                                                          <  2:101241‑M1/81‑1 (MQ=255)                                                                                                                                GCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTcc                                                                                          >  1:101241‑M1/1‑81 (MQ=255)                                                                                                                                               ggccttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACCGTGAATGCGCAGCAGGATGTcc      >  2:473256‑M2/7‑150 (MQ=255)                                                                                                                                                  cttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCAc                                            <  2:340186‑M2/106‑1 (MQ=255)                                                                                                                                                  cttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCAc                                            >  1:340186‑M2/4‑109 (MQ=255)                                                                                                                                                   ttCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGGAAGCAGTTCCGGGCTTCCGACACGCCAACGCGGAGATCGGAAGAGGACTGGTGTGTACTTTGAATGCGCCGCAGGCTGTCcttct  >  1:570694/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAACAGGTAGCCACCGGGCTTGAGGGTACTGTGAATGCGCAGCAGGATGTCCTTCT  >  NC_002947/4983767‑4984062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.