| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4983887 = | 19 (0.420) | 5 (0.120) | 4/232 | NT | 23.9% | intergenic (‑289/+33) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase |
| ? | NC_002947 | 4983915 = | 14 (0.330) | intergenic (‑317/+5) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase | |||||
CGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAA > NC_002947/4983742‑4984009 | cGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGc < 2:603593/150‑1 (MQ=255) ggacatcctgctgcgcattcacggtaccctcaagcccggtggctacctgttcctcggcgcctcggaagcgctgaacggcttgccggaccattaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGcc > 2:473256‑M1/145‑150 (MQ=255) gcttGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGcc < 2:813149/147‑1 (MQ=255) ggTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGAAGTAGCGTATAGGCATACAAAAAGGCCGGCAtc < 1:31253/150‑1 (MQ=255) aaaaGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGc < 1:267597/141‑1 (MQ=255) aaaaGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGc > 2:267597/1‑141 (MQ=255) cacagtaccctcaagcccggtggctacctgttcctcggcgcctcggaagcgctgaacggcttgccggaccattaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGc > 1:298851‑M1/126‑150 (MQ=255) tGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCg > 1:94177/1‑150 (MQ=255) gtggctacctgttcctcggcgcctcggaagcgctgaacggcttgccggaccattaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAg < 2:340186‑M1/3‑1 (MQ=255) gtggctacctgttcctcggcgcctcggaagcgctgaacggcttgccggaccattaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAg > 1:340186‑M1/107‑109 (MQ=255) gcggcaaaaCAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg < 2:669055/150‑1 (MQ=255) ttGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCggg < 1:1012826/150‑1 (MQ=255) gACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGct < 2:385532/150‑1 (MQ=255) gTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTACACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgca < 1:819376/150‑1 (MQ=255) tCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATc > 2:756191/1‑150 (MQ=255) cTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTg > 2:141107/1‑150 (MQ=255) tctccTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGTATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGATAACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATg < 1:30744/147‑1 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGTATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCCACATCTAGTAAttgaga > 2:30744/1‑145 (MQ=255) ttaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGCCTTCGt < 2:337801‑M1/31‑1 (MQ=255) ttaccagatggtgcagtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGCCTTCGt > 1:337801‑M1/55‑85 (MQ=255) cTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa > 1:985161/1‑122 (MQ=255) cTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTaa < 2:985161/122‑1 (MQ=255) agtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGc < 2:1156402‑M1/25‑1 (MQ=255) agtgcagcccggggatcatctaccaggccaagtaagcacgAAGGCCGGCATCTCTCGATACCGGc > 1:1156402‑M1/41‑65 (MQ=255) ggggAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGgc > 1:558852/1‑150 (MQ=255) tCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAgg > 1:294947/1‑150 (MQ=255) tCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAgg > 1:1137449/1‑150 (MQ=255) ggCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGaa > 2:715122/1‑150 (MQ=255) | CGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTCAGCGCTTCCGAGGCGCCGAGGAA > NC_002947/4983742‑4984009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |