New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4984361 =	44 (0.980)	3 (0.070)	3/242	NT	6.4%	coding (387/828 nt)	cheR	chemotaxis protein methyltransferase
	?	NC_002947	4984382 =	45 (1.020)					coding (366/828 nt)	cheR	chemotaxis protein methyltransferase

CGACACCTACCCGTTCGAGGTGTTGAAGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCGGCCAGCGCCTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGCAGGAGCCGTATTCCATTTCAATGGCGATCG‑ACGAGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4984511‑4984361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGT  >  NC_002947/4984382‑4984530                                                                                                                                                                                                                                                                                                               CGACACCTACCCGTTCGAGGTGTTGAAGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCGGCCAGCGCCTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGCAGGAGCCGTATTCCATTTCAATGGCGATCG‑ACGAGTTCGAGCG                                                                                                                                                        >  2:1026092/1‑150                    GTGTTGAAGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCCGCCAGCGCTTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGAAGGAGCCGTATTCCATTTCAATGGCGCTCG‑AACTCGTCGATCGCCATTGAAATGGAATACGG                                                                                                                                     <  1:513021/150‑1                           AGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCGGCCAGCGCCTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGCAGGAGCCGTATTCCATTTCAATGGCGCTCGAACTCG‑TCGATCGCCATTGAAATGGAATA                                                                                                                                        >  1:1009143/1‑140                           AGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCGGCCAGCGCCTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGCAGGAGCCGTATTCCATTTCAATGGCGCTCG‑AACTCGTCGATCGCCATTGAAATGGAATA                                                                                                                                        <  2:1009143/140‑1                                                                                                                                                        CCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGT  >  2:334456/1‑150                                                                                                                                                                                                                                                                                                               CGACACCTACCCGTTCGAGGTGTTGAAGAACAAGGTGATCCCCGAGTTCATCCGCAACAACCCCGGCCAGCGCCTGCGCATGTGGTCGGCGGCCTGTTCGTCGGGGCAGGAGCCGTATTCCATTTCAATGGCGATCG‑ACGAGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4984511‑4984361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGT  >  NC_002947/4984382‑4984530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.