New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4984361 =	44 (0.980)	3 (0.070)	3/242	NT	6.4%	coding (387/828 nt)	cheR	chemotaxis protein methyltransferase
	?	NC_002947	4984382 =	45 (1.020)					coding (366/828 nt)	cheR	chemotaxis protein methyltransferase

GGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGT  >  NC_002947/4984241‑4984530                                                                                                                                               |                                                                                                                                                     ggACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAAt                                                                                                                                              >  1:877594/1‑150 (MQ=255)    cAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGa                                                                                                                                           <  1:440908/150‑1 (MQ=255)           gtgttgaagaacaaggtgatccccgagttcatccgcaacaacccccgccagcgcttgcgcatgtggtcggcggcctgttcgtcggggaaggagccgtattccatttcaatggcgctcgaactcgtcgatcgcCATTGAAATGGAATACgg                                                                                                                                     <  1:513021‑M2/18‑1 (MQ=255)             ggCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCACCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTc                                                                                                                                  <  1:742563/150‑1 (MQ=255)                  agaacaaggtgatccccgagttcatccgcaacaaccccggccagcgcctgcgcatgtggtcggcggcctgttcgtcggggcaggagccgtattccatttcaatggcgctcgaactcgtcgatcgcCATTGAAATGGAATa                                                                                                                                        >  1:1009143‑M2/126‑140 (MQ=255)                  agaacaaggtgatccccgagttcatccgcaacaaccccggccagcgcctgcgcatgtggtcggcggcctgttcgtcggggcaggagccgtattccatttcaatggcgctcgaactcgtcgatcgcCATTGAAATGGAATa                                                                                                                                        <  2:1009143‑M2/15‑1 (MQ=255)                          cTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGACAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                                                     <  2:870481/150‑1 (MQ=255)                            ttCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACa                                                                                                                   <  1:422120/149‑1 (MQ=255)                              cGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAgg                                                                                                                 <  1:1081333/150‑1 (MQ=255)                                     gCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCAAAGCCCTACGAACAGGCCGCCGa                                                                                                          >  1:967758/1‑150 (MQ=255)                                      ccGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGAc                                                                                                         >  2:824632/1‑150 (MQ=255)                                              gCAGTTGGTCAGCATGGTGCCGGAGAGNTCGGTGGCGACGNTCTGCGNCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATgcg                                                                                                 >  1:820427/1‑150 (MQ=255)                                                  ttGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAgg                                                                                             >  1:1026092/1‑150 (MQ=255)                                                      tCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTAGT‑CGATCGCCATTGGAATCAAAGAGAGCTTCGTTGCGGACGAACAGGCCGCCGACCACATGCGCAGGCGCt                                                                                         <  1:328941/150‑1 (MQ=255)                                                         gCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGc                                                                                      >  2:792955/1‑150 (MQ=255)                                                              gTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCgggg                                                                                 <  1:824632/150‑1 (MQ=255)                                                               tGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGgt                                                                                >  1:1074893/1‑150 (MQ=255)                                                                    gagagaTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGttgttg                                                                           >  2:36456/1‑150 (MQ=255)                                                                         aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTGGAGCTCCT‑CCTTGTCGAGTGAAATGGCATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                                                      <  1:687768/150‑1 (MQ=255)                                                                         aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                                                      <  2:784467/150‑1 (MQ=255)                                                                         aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                                                      <  1:792955/150‑1 (MQ=255)                                                                                gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCTGCCGTCCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCg                                                               <  1:1182045/150‑1 (MQ=255)                                                                                gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCg                                                               <  1:1036193/150‑1 (MQ=255)                                                                                gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGATGTTGAGGATGaccaag                                                               >  2:1036193/1‑145 (MQ=255)                                                                                  gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                                                     <  2:1143146/94‑1 (MQ=255)                                                                                  gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                                                     >  1:1143146/1‑94 (MQ=255)                                                                                  gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCggg                                                             <  1:1106468/150‑1 (MQ=255)                                                                                     gaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCTGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGAt                                                          <  2:867861/150‑1 (MQ=255)                                                                                      gtCTGCGCCCCCATCTTCAACCGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGGCCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACGCGGGGATc                                                         <  2:820427/149‑1 (MQ=255)                                                                                          gcgcCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCt                                                     >  1:412962/1‑150 (MQ=255)                                                                                           cgcCCTCCTCTTCTACTGTCTGGCGTTGCTGCTCTCGAACTCGG‑CGATCGCCATTTAATTTGAATACTCCTCCTGCCCCGACGAACAGGCCGCCGACCACATCCGCAGCCGCTGGCCTGGGTTGTTGCGGATGAACTCGGGGATCACCtt                                                    <  2:394636/150‑1 (MQ=255)                                                                                              ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGc                                                                          >  1:460853/1‑125 (MQ=255)                                                                                              ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGc                                                                          <  2:460853/125‑1 (MQ=255)                                                                                              ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGtt                                                 >  2:326704/1‑150 (MQ=255)                                                                                               cccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttc                                                <  2:412962/150‑1 (MQ=255)                                                                                                    cTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCaa                                           <  1:921332/150‑1 (MQ=255)                                                                                                       ccgtattccatttcaatgGCGATCGACGAGTT‑CGAGCGCCATTGAAATGGAATACGGCTCCTTCCCCGACGAACAGGCCGCCGACCACATGCGCAAGCGCTGGCGGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAacac                                        <  1:513021‑M1/132‑1 (MQ=255)                                                                                                          tattccatttcaatgGCGATCGACGAGTT‑CGAGCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttct                                               <  2:1009143‑M1/125‑1 (MQ=255)                                                                                                          tattccatttcaatgGCGATCGA‑CGAGTTCGAGCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttct                                               >  1:1009143‑M1/16‑140 (MQ=255)                                                                                                             gCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGaa                                  >  2:532407/1‑150 (MQ=255)                                                                                                                  ggTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGt                             <  1:36456/150‑1 (MQ=255)                                                                                                                        tgcGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGTGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGa                                                           >  1:557281/1‑114 (MQ=255)                                                                                                                        tgcGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGTGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGa                                                           <  2:557281/114‑1 (MQ=255)                                                                                                                          CGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTcg                     >  2:1026092‑M1/1‑150 (MQ=255)                                                                                                                             tCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGa                  >  1:602513/1‑150 (MQ=255)                                                                                                                             tCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGa                  >  2:282999/1‑150 (MQ=255)                                                                                                                               gAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttc                                                >  2:1080524/1‑118 (MQ=255)                                                                                                                               gAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttc                                                <  1:1080524/118‑1 (MQ=255)                                                                                                                                   tcgt‑cgATCGCCATTGAAATGGAATACGGCCCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATg                                                                     >  2:375184/1‑93 (MQ=255)                                                                                                                                   tcgt‑cgATCGCCATTGAAATGGAATACGGCCCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATg                                                                     <  1:375184/93‑1 (MQ=255)                                                                                                                                     gt‑cgATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAg          <  1:326704/150‑1 (MQ=255)                                                                                                                                     gt‑cgATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAg          <  2:967758/150‑1 (MQ=255)                                                                                                                                              cCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGt  >  2:334456‑M2/2‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGTAGGTGTCGCGAAACCACAGGGTCTCGT  >  NC_002947/4984241‑4984530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.