New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4984361 =	44 (0.980)	3 (0.070)	3/242	NT	6.4%	coding (387/828 nt)	cheR	chemotaxis protein methyltransferase
	?	NC_002947	4984382 =	45 (1.020)					coding (366/828 nt)	cheR	chemotaxis protein methyltransferase

GGATCGAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGT  >  NC_002947/4984212‑4984503                                                                                                                                                      |                                                                                                                                                acgagaccctgtggtttcgcgacacctacccgttcgaggtgttgaagaacaaggtgatccccgagttcatccgcaacaaccccggccagcgcctgcgcatgtggtcggcggcctgttcgtcggggcaggagccgtattccatttcaatgg                                                                                                                                                 >  2:334456‑M1/150‑150 (MQ=255)     cGAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCt                                                                                                                                             <  1:51082/150‑1 (MQ=255)      gAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTc                                                                                                                                            <  2:92225/150‑1 (MQ=255)      gAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTc                                                                                                                                            >  2:1182045/1‑150 (MQ=255)      gAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTc                                                                                                                                            <  1:377104/150‑1 (MQ=255)       aaGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCg                                                                                                                                           >  2:440908/1‑150 (MQ=255)       aaGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCg                                                                                                                                           >  1:784467/1‑150 (MQ=255)               cTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACtcgt‑c                                                                                                                                  >  2:921332/1‑150 (MQ=255)                  cAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGGTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTGGAACtcgg‑cgtt                                                                                                                               >  1:394636/1‑148 (MQ=255)                    ggCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCg                                                                                                                             >  1:867861/1‑150 (MQ=255)                    ggCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCg                                                                                                                             <  1:988143/150‑1 (MQ=255)                              ggACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAAt                                                                                                                   >  1:877594/1‑150 (MQ=255)                                 cAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGa                                                                                                                <  1:440908/150‑1 (MQ=255)                                          ggCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCACCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTc                                                                                                       <  1:742563/150‑1 (MQ=255)                                                       cTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGACAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                          <  2:870481/150‑1 (MQ=255)                                                         ttCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACa                                                                                        <  1:422120/149‑1 (MQ=255)                                                           cGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAgg                                                                                      <  1:1081333/150‑1 (MQ=255)                                                                  gCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCAAAGCCCTACGAACAGGCCGCCGa                                                                               >  1:967758/1‑150 (MQ=255)                                                                   ccGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGAc                                                                              >  2:824632/1‑150 (MQ=255)                                                                           gCAGTTGGTCAGCATGGTGCCGGAGAGNTCGGTGGCGACGNTCTGCGNCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATgcg                                                                      >  1:820427/1‑150 (MQ=255)                                                                               ttGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAgg                                                                  >  1:1026092/1‑150 (MQ=255)                                                                                   tCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTAGT‑CGATCGCCATTGGAATCAAAGAGAGCTTCGTTGCGGACGAACAGGCCGCCGACCACATGCGCAGGCGCt                                                              <  1:328941/150‑1 (MQ=255)                                                                                      gCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGc                                                           >  2:792955/1‑150 (MQ=255)                                                                                           gTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCgggg                                                      <  1:824632/150‑1 (MQ=255)                                                                                            tGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGgt                                                     >  1:1074893/1‑150 (MQ=255)                                                                                                 gagagaTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGttgttg                                                >  2:36456/1‑150 (MQ=255)                                                                                                      aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTGGAGCTCCT‑CCTTGTCGAGTGAAATGGCATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                           <  1:687768/150‑1 (MQ=255)                                                                                                      aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                           <  1:792955/150‑1 (MQ=255)                                                                                                      aTCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGAt                                           <  2:784467/150‑1 (MQ=255)                                                                                                             gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCTGCCGTCCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCg                                    <  1:1182045/150‑1 (MQ=255)                                                                                                             gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCg                                    <  1:1036193/150‑1 (MQ=255)                                                                                                             gCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGATGTTGAGGATGaccaag                                    >  2:1036193/1‑145 (MQ=255)                                                                                                               gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                          <  2:1143146/94‑1 (MQ=255)                                                                                                               gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGaa                                                                                          >  1:1143146/1‑94 (MQ=255)                                                                                                               gacgaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCggg                                  <  1:1106468/150‑1 (MQ=255)                                                                                                                  gaTCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCTGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGAt                               <  2:867861/150‑1 (MQ=255)                                                                                                                   gtCTGCGCCCCCATCTTCAACCGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGGCCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACGCGGGGATc                              <  2:820427/149‑1 (MQ=255)                                                                                                                       gcgcCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCt                          >  1:412962/1‑150 (MQ=255)                                                                                                                        cgcCCTCCTCTTCTACTGTCTGGCGTTGCTGCTCTCGAACTCGG‑CGATCGCCATTTAATTTGAATACTCCTCCTGCCCCGACGAACAGGCCGCCGACCACATCCGCAGCCGCTGGCCTGGGTTGTTGCGGATGAACTCGGGGATCACCtt                         <  2:394636/150‑1 (MQ=255)                                                                                                                           ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGc                                               <  2:460853/125‑1 (MQ=255)                                                                                                                           ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGc                                               >  1:460853/1‑125 (MQ=255)                                                                                                                           ccccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGtt                      >  2:326704/1‑150 (MQ=255)                                                                                                                            cccATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttc                     <  2:412962/150‑1 (MQ=255)                                                                                                                                 cTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCaa                <  1:921332/150‑1 (MQ=255)                                                                                                                                    ccgtattccatttcaatgGCGATCGACGAGTT‑CGAGCGCCATTGAAATGGAATACGGCTCCTTCCCCGACGAACAGGCCGCCGACCACATGCGCAAGCGCTGGCGGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAacac             <  1:513021‑M1/132‑1 (MQ=255)                                                                                                                                       tattccatttcaatgGCGATCGACGAGTT‑CGAGCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttct                    <  2:1009143‑M1/125‑1 (MQ=255)                                                                                                                                       tattccatttcaatgGCGATCGA‑CGAGTTCGAGCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGttct                    >  1:1009143‑M1/16‑140 (MQ=255)                                                                                                                                          gCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGaa       >  2:532407/1‑150 (MQ=255)                                                                                                                                               ggTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGt  <  1:36456/150‑1 (MQ=255)                                                                                                                                                     tgcGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGTGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGa                                <  2:557281/114‑1 (MQ=255)                                                                                                                                                     tgcGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGTGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGa                                >  1:557281/1‑114 (MQ=255)                                                                                                                                                      |                                                                                                                                                GGATCGAAGTAGCGCTGCAGGCGTTCCTGGGACAGGCCGCGGGCAATCGCCAGGCTGTCGTATTCGCCGGTCTTGCAGTTGGTCAGCATGGTGCCGGAGAGATCGGTGGCGACGATCTGCGCCCCCATCTTCAACTGGCCGAGGTTGCTGCGCTCGAACTCGT‑CGATCGCCATTGAAATGGAATACGGCTCCTGCCCCGACGAACAGGCCGCCGACCACATGCGCAGGCGCTGGCCGGGGTTGTTGCGGATGAACTCGGGGATCACCTTGTTCTTCAACACCTCGAACGGGT  >  NC_002947/4984212‑4984503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.