New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4990521	41 (0.910)	4 (0.090)	4/234	NT	8.6%	coding (659/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990551	46 (1.080)					coding (629/1242 nt)	PP_4399	glutamine synthetase

GTTGACGTTGGGTGCAAACAGGGCGGTGAAGTCGGCCATGCACGCCTGCAACCCGCCGATGAAATGGTGGAAGGTTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4990367‑4990521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcatggCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCATGCACATTCACCAGAGCCTGGTCGAGGCCGGCAGCGGCCGTAACGTATTCAGTGACGAGCAAGGCCTGCCGACAGAAACCTTCCACCATTTCATCGGCGGGTTGCAGGCGTGCATG  <  NC_002947/4990551‑4990403                                                                                                                                                                                                                                                                                                                  GTTGACGTTGGGTGCAAACAGGGCGGTGAAGTCGGCCATGCACGCCTGCAACCCGACGATGAAATGGTGGAAGGTTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTCCGGCCTCTGCGGGCCTCGACCACGCTCTGGTGAATGTG                                                                                                                                                            >  2:73136/1‑150  TTGACGTTGGGTGCAAACAGGGCGGTGAAGTCGGCCATGCACGCCTGCAACCCGCCGATGAAATGGTGGAAGGTTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGC                                                                                                                                                           <  1:562477/150‑1  TTGACGTTGGGTGCAAACAGGGCGGTGAAGTCGGCCATGCACGCCTGCAACCCGCCGATGAAATGGTGGAAGGTTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGC                                                                                                                                                           <  2:1147527/150‑1                                                                           TTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGGCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCATGCACATTC                                                                                                             <  1:839426/123‑1                                                                           TTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGGCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCATGCACATTC                                                                                                             >  2:839426/1‑123                                                                                                             GTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGGCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCAT                                                                                                                     <  1:89244/81‑1                                                                                                             GTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGGCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCAT                                                                                                                     >  2:89244/1‑81                                                                                                                                                           GCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCATGCACATTCACCAGAGCCTGGTCGAGGCCGGCAGCGGCCGTAACGTATTCAGTGACGAGCAAGGCCTGCCGACAGAAACCTTCCACCATTTCATCGGCGGGTTGCAGGCGTGCATG  >  1:771518/1‑150                                                                                                                                                                                                                                                                                                                  GTTGACGTTGGGTGCAAACAGGGCGGTGAAGTCGGCCATGCACGCCTGCAACCCGCCGATGAAATGGTGGAAGGTTTCTGTCGGCAGGCCTTGCTCGTCACTGAATACGTTACGGCCGCTGCCGGCCTCGACCAGGCTCTGGTGAATGTGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4990367‑4990521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcatggCCAAGCCGCTGGCGCGTACGCCCGGCAGTTCCATGCACATTCACCAGAGCCTGGTCGAGGCCGGCAGCGGCCGTAACGTATTCAGTGACGAGCAAGGCCTGCCGACAGAAACCTTCCACCATTTCATCGGCGGGTTGCAGGCGTGCATG  <  NC_002947/4990551‑4990403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.