| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5051176 | 47 (1.040) | 4 (0.090) | 4/232 | NT | 8.9% | intergenic (‑68/+306) | PP_5687/PP_4452 | MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein |
| ? | NC_002947 | = 5051184 | 38 (0.900) | intergenic (‑76/+298) | PP_5687/PP_4452 | MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein | |||||
AGGCGCTGCTAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5051025‑5051176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgagcTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGGTTGAAA < NC_002947/5051184‑5051037 AGGCGCTGCTAGTTTCAACCCGTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGAAATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGA < 2:178165/150‑1 TTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGCTCCACGCGGCTCAGGGTTTTTTT > 1:1202858/1‑90 TTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGCTCCACGCGGCTCAGGGTTTTTTT < 2:1202858/90‑1 TAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGCTCCACGCGGCTCAGGG > 1:43295/1‑61 TAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGCTCCACGCGGCTCAGGG < 2:43295/61‑1 CCCTGAGCTCCACGCGGCTCAGGGTTTTTTTCGTTCT‑GACACGAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGG < 1:919080/150‑1 CCTGAGCTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGA < 1:599693/74‑1 CCTGAACTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGA > 2:599693/1‑74 GCTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGGTTGAAA < 2:602300/150‑1 CTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGGTT > 1:1031072/1‑145 CTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGGTT < 2:1031072/145‑1 AGGCGCTGCTAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCTCTCGAGAACGAAAAAAACCCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5051025‑5051176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgagcTCCACGCGGCTCAGGGTTTTTTTCGTTCTCGAGA‑GAAAAGTTAATGTGCGTTACACTGTCGTAGTGAGTGTATAACATGTCACGCTCCCAGTTGCTTTTGGTACTCTGTGCTCAAACCCTCATGCTAGCGGCATTTCAAGGGTTGAAA < NC_002947/5051184‑5051037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |