New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5051176	47 (1.040)	4 (0.090)	4/232	NT	8.9%	intergenic (‑68/+306)	PP_5687/PP_4452	MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein
	?	NC_002947	= 5051184	38 (0.900)					intergenic (‑76/+298)	PP_5687/PP_4452	MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein

TTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCACC  >  NC_002947/5051037‑5051319                                                                                                                                                     |                                                                                                                                        tttCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgc                                                                                                                                       <  2:602300‑M2/150‑3 (MQ=255)     aaCCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAg                                                                                                                                        >  1:1031072‑M2/1‑144 (MQ=255)     aaCCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAg                                                                                                                                        <  2:1031072‑M2/145‑2 (MQ=255)       cccTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCGTGTC‑AGAACGAAAAAAACCCTGAGCCGCGTGGAgctcaggg                                                                                                                                 <  1:919080‑M2/150‑9 (MQ=255)          ttGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaa                                                                                                                              >  1:1145726/1‑150 (MQ=255)                  ccGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACaaa                                                                                                                      <  1:288071/150‑1 (MQ=255)                          aTGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTaaa                                                                                                              >  1:129393/1‑150 (MQ=255)                              gggTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGGACAAAGGATTAAatcat                                                                                                          <  2:101302/150‑1 (MQ=255)                               ggTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAACCCCTGAGCCGCGTGGAGCTCAGGGAAACGTACACAGGATTAAatcatc                                                                                                         <  2:352158/150‑1 (MQ=255)                                 tttGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             >  1:1042056/1‑128 (MQ=255)                                 tttGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             <  2:1042056/128‑1 (MQ=255)                                    gAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAcc                                                                                                    >  2:1115897/1‑150 (MQ=255)                                        acaGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTg                                                                                                >  2:528111/1‑150 (MQ=255)                                           gagTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             >  2:1083300/1‑118 (MQ=255)                                           gagTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             <  1:1083300/118‑1 (MQ=255)                                               aaaaaaaGCAACTGGGAGCGTGACATATTATACACACACTACGACAGTGTAAAGCACATTAACTTTTC‑AAAAAAAAAAAAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa                                                                                         <  2:750382/147‑1 (MQ=255)                                                ccAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAg                                                                                        <  1:526359/150‑1 (MQ=255)                                                 cAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAgg                                                                                       <  2:481660/150‑1 (MQ=255)                                                   aaaGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             <  2:1127386/110‑1 (MQ=255)                                                   aaaGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             >  1:1127386/1‑110 (MQ=255)                                                        aaCTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGaa                                                                                <  1:602300/150‑1 (MQ=255)                                                             ggAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCAAATAAAGTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACgaga                                                                           <  2:676786/150‑1 (MQ=255)                                                                     aCATGTTATACTCTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg                                                                   <  2:1175418/150‑1 (MQ=255)                                                                        tGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGa                                                                <  1:1115897/150‑1 (MQ=255)                                                                          ttATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACa                                                              >  1:306988/1‑150 (MQ=255)                                                                           tataCACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TATCGAAAAAAAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACaa                                                             <  2:129393/150‑1 (MQ=255)                                                                               cactcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa                                                                                         <  2:643351/118‑1 (MQ=255)                                                                               cactcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa                                                                                         >  1:643351/1‑118 (MQ=255)                                                                                  tcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgttcagg                                                                                                                                  >  2:599693‑M2/1‑67 (MQ=255)                                                                                  tcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgctcagg                                                                                                                                  <  1:599693‑M2/74‑8 (MQ=255)                                                                                   cactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGa                                                     <  2:1145726/150‑1 (MQ=255)                                                                                    actACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAg                                                    >  2:221426/1‑150 (MQ=255)                                                                                         gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAccc                                                                                                   >  1:778692/1‑98 (MQ=255)                                                                                         gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAccc                                                                                                   <  2:778692/98‑1 (MQ=255)                                                                                         gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga                                               >  1:14976/1‑150 (MQ=255)                                                                                         gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga                                               >  2:870112/1‑150 (MQ=255)                                                                                         gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga                                               >  1:402513/1‑150 (MQ=255)                                                                                          aCAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatgat                                              <  2:402513/150‑1 (MQ=255)                                                                                              tgtAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAaga                                                                     >  2:182976/1‑123 (MQ=255)                                                                                              tgtAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAaga                                                                     <  1:182976/123‑1 (MQ=255)                                                                                                 aaCGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAAAGAGAGCAAGAGGCAACAAGGAGGTGACTATGATGTGACcg                                       >  2:917999/1‑150 (MQ=255)                                                                                                        aTTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             <  1:60140/57‑1 (MQ=255)                                                                                                        aTTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa                                                                                                                             >  2:60140/1‑57 (MQ=255)                                                                                                            aCTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg                                                                   <  2:971440/111‑1 (MQ=255)                                                                                                            aCTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg                                                                   >  1:971440/1‑111 (MQ=255)                                                                                                                      tcGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTaa                   >  1:38435/1‑150 (MQ=255)                                                                                                                            aagAACAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTAAAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTgg             <  1:603421/148‑1 (MQ=255)                                                                                                                            aCGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTgg             <  1:528111/150‑1 (MQ=255)                                                                                                                              gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCat                                                 >  2:173731/1‑112 (MQ=255)                                                                                                                              gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCat                                                 <  1:173731/112‑1 (MQ=255)                                                                                                                              gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCa           >  2:879098/1‑150 (MQ=255)                                                                                                                               aaaaaaaCCCTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataa                                                                      <  2:1202858‑M2/90‑68 (MQ=255)                                                                                                                               aaaaaaaCCCTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataa                                                                      >  1:1202858‑M2/1‑23 (MQ=255)                                                                                                                                  aaaaCCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGAGCCGCATCACAGGTCTTAATTCTGGCATTAt       <  1:221426/150‑1 (MQ=255)                                                                                                                                      cccTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgtta                                                                                            <  2:43295‑M2/61‑46 (MQ=255)                                                                                                                                      cccTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgtta                                                                                            >  1:43295‑M2/1‑16 (MQ=255)                                                                                                                                       ccTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTATATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGAGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCAcc  >  1:1151864/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                        TTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCACC  >  NC_002947/5051037‑5051319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.