| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5051176 | 47 (1.040) | 4 (0.090) | 4/232 | NT | 8.9% | intergenic (‑68/+306) | PP_5687/PP_4452 | MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein |
| ? | NC_002947 | = 5051184 | 38 (0.900) | intergenic (‑76/+298) | PP_5687/PP_4452 | MFS transporter/NAD/NADP octopine/nopaline dehydrogenase family protein | |||||
CTGCTAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCACCCATGG > NC_002947/5051030‑5051324 | ctgctAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCcgc < 2:930719/150‑1 (MQ=255) gctAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGt > 1:101302/1‑150 (MQ=255) tttCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgc < 2:602300‑M2/150‑3 (MQ=255) aaCCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAg > 1:1031072‑M2/1‑144 (MQ=255) aaCCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAg < 2:1031072‑M2/145‑2 (MQ=255) cccTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTCGTGTC‑AGAACGAAAAAAACCCTGAGCCGCGTGGAgctcaggg < 1:919080‑M2/150‑9 (MQ=255) ttGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaa > 1:1145726/1‑150 (MQ=255) ccGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACaaa < 1:288071/150‑1 (MQ=255) aTGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTaaa > 1:129393/1‑150 (MQ=255) gggTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGGACAAAGGATTAAatcat < 2:101302/150‑1 (MQ=255) ggTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAACCCCTGAGCCGCGTGGAGCTCAGGGAAACGTACACAGGATTAAatcatc < 2:352158/150‑1 (MQ=255) tttGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa < 2:1042056/128‑1 (MQ=255) tttGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa > 1:1042056/1‑128 (MQ=255) gAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAcc > 2:1115897/1‑150 (MQ=255) acaGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTg > 2:528111/1‑150 (MQ=255) gagTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa > 2:1083300/1‑118 (MQ=255) gagTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa < 1:1083300/118‑1 (MQ=255) aaaaaaaGCAACTGGGAGCGTGACATATTATACACACACTACGACAGTGTAAAGCACATTAACTTTTC‑AAAAAAAAAAAAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa < 2:750382/147‑1 (MQ=255) ccAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAg < 1:526359/150‑1 (MQ=255) cAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAgg < 2:481660/150‑1 (MQ=255) aaaGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa > 1:1127386/1‑110 (MQ=255) aaaGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa < 2:1127386/110‑1 (MQ=255) aaCTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGaa < 1:602300/150‑1 (MQ=255) ggAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCAAATAAAGTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACgaga < 2:676786/150‑1 (MQ=255) aCATGTTATACTCTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg < 2:1175418/150‑1 (MQ=255) tGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGa < 1:1115897/150‑1 (MQ=255) ttATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCtccacgcggctcagggttttttt > 1:1202858‑M1/1‑67 (MQ=255) ttATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCtccacgcggctcagggttttttt < 2:1202858‑M1/90‑24 (MQ=255) ttATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACa > 1:306988/1‑150 (MQ=255) tataCACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TATCGAAAAAAAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACaa < 2:129393/150‑1 (MQ=255) cactcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa < 2:643351/118‑1 (MQ=255) cactcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTaa > 1:643351/1‑118 (MQ=255) tcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgttcagg > 2:599693‑M2/1‑67 (MQ=255) tcactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAgctcagg < 1:599693‑M2/74‑8 (MQ=255) cactACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGa < 2:1145726/150‑1 (MQ=255) actACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAg > 2:221426/1‑150 (MQ=255) gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAccc > 1:778692/1‑98 (MQ=255) gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTAccc < 2:778692/98‑1 (MQ=255) gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga > 1:14976/1‑150 (MQ=255) gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga > 1:402513/1‑150 (MQ=255) gACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatga > 2:870112/1‑150 (MQ=255) aCAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCatgat < 2:402513/150‑1 (MQ=255) tgtAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAaga < 1:182976/123‑1 (MQ=255) tgtAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAaga > 2:182976/1‑123 (MQ=255) tAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCtccacgcggctcaggg > 1:43295‑M1/1‑45 (MQ=255) tAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCtccacgcggctcaggg < 2:43295‑M1/61‑17 (MQ=255) aaCGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAAAGAGAGCAAGAGGCAACAAGGAGGTGACTATGATGTGACcg > 2:917999/1‑150 (MQ=255) aTTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa > 2:60140/1‑57 (MQ=255) aTTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGaaaa < 1:60140/57‑1 (MQ=255) aCTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg < 2:971440/111‑1 (MQ=255) aCTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAgg > 1:971440/1‑111 (MQ=255) tcGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTaa > 1:38435/1‑150 (MQ=255) aagAACAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTAAAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTgg < 1:603421/148‑1 (MQ=255) aCGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTgg < 1:528111/150‑1 (MQ=255) gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCat < 1:173731/112‑1 (MQ=255) gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCat > 2:173731/1‑112 (MQ=255) gAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCa > 2:879098/1‑150 (MQ=255) aaaaaaaCCCTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataa < 2:1202858‑M2/90‑68 (MQ=255) aaaaaaaCCCTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataa > 1:1202858‑M2/1‑23 (MQ=255) aaaaCCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGAGCCGCATCACAGGTCTTAATTCTGGCATTAt < 1:221426/150‑1 (MQ=255) cccTGAGCtccacgcggctcagggtttttttcgttctgacacgaaaagttaatgtgcgttacactgtcgtagtgagtgtataacatgtcacgctcccagttgcttttggtactctgtgctcaaaccctcatgctagcggcatttcaaggg < 1:919080‑M1/150‑143 (MQ=255) cccTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgtta < 2:43295‑M2/61‑46 (MQ=255) cccTGAGCCGCGTGGAgctcagggtttttttcgttctcgagagaaaagttaatgtgcgtta > 1:43295‑M2/1‑16 (MQ=255) ccTGAGCtccacgcggctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtga < 1:599693‑M1/74‑68 (MQ=255) ccTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTATATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGAGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCAcc > 1:1151864/1‑150 (MQ=255) ccTGAACtccacgcggctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtga > 2:599693‑M1/1‑7 (MQ=255) gCtccacgcggctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataacatgtcacgctcccagttgcttttggtactctgtgctcaaaccctcatgctagcggcatttcaagggttgaaa < 2:602300‑M1/150‑149 (MQ=255) ctccacgcggctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataacatgtcacgctcccagttgcttttggtactctgtgctcaaaccctcatgctagcggcatttcaagggtt < 2:1031072‑M1/145‑145 (MQ=255) ctccacgcggctcagggtttttttcgttctcgagagaaaagttaatgtgcgttacactgtcgtagtgagtgtataacatgtcacgctcccagttgcttttggtactctgtgctcaaaccctcatgctagcggcatttcaagggtt > 1:1031072‑M1/1‑1 (MQ=255) | CTGCTAGTTTCAACCCTTGAAATGCCGCTAGCATGAGGGTTTGAGCACAGAGTACCAAAAGCAACTGGGAGCGTGACATGTTATACACTCACTACGACAGTGTAACGCACATTAACTTTTC‑TCTCGAGAACGAAAAAAACCCTGAGCCGCGTGGAGCTCAGGGAAAAGTACAAAGGATTAAATCATCTTACCCCTGTATCTAAGGGTGAGAACGAGAGCAAGAGGCGACAATGATGTGAGCATGATGTGACCGCGCCGCATCACAGGTCTTAATTCTGGCATTATCCACCCATGG > NC_002947/5051030‑5051324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |