New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5081638 =	46 (1.020)	6 (0.140)	6/232	NT	12.4%	intergenic (‑52/+51)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase
	?	NC_002947	5081683 =	42 (0.990)					intergenic (‑97/+6)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase

GGGCGGCGGCCGTCCGGACATGGCCCAGGGTGGTGGCGTCGACGTCGCTGCCCTGGACCAGGCCCTGGCGCTGGCCGTGCCATTCGCAGAGCAGGGACTTTGAGATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5081791‑5081638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAG  >  NC_002947/5081683‑5081826                                                                                                                                                                                                                                                                                                            GGGCGGCGGCCGTCCGGACATGGCCCAGGGTGGTGGCGTCGACGTCGCTGCCCTGGACCAGGCCCTGGCGCTGGCCGTGCCATTCGCAGAGCAGGGACTTTGAGATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCA                                                                                                                                                      >  2:683953/1‑150    CGGCGGCCGTCCGGACATGGCCCAGGGTGGTGGCGTCGACGTCGCTGCCCTGGACCAGGCCCTGGCGCTGGCCGTGCCATTCGCAGAGCAGGGACTTTGAGATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCC                                                                                                                                                   <  1:683953/150‑1                                                                                                                 GTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCC                                      >  2:179848/1‑150                                                                                                                   GGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGG                                                             <  1:450470/125‑1                                                                                                                   GGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGG                                                             >  2:450470/1‑125                                                                                                                     AGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGA                                                 <  1:707956/135‑1                                                                                                                     AGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGA                                                 >  2:707956/1‑135                                                                                                                       GGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCC                                >  1:638177/1‑150                                                                                                                                                   TCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATC    <  2:366245/150‑1                                                                                                                                                   TCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATC    <  2:757876/150‑1                                                                                                                                                     CACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAG  >  2:939524/1‑150                                                                                                                                                          CCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTT            >  1:868113/1‑135                                                                                                                                                          CCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTT            <  2:868113/135‑1                                                                                                                                                                                                                                                                                                            GGGCGGCGGCCGTCCGGACATGGCCCAGGGTGGTGGCGTCGACGTCGCTGCCCTGGACCAGGCCCTGGCGCTGGCCGTGCCATTCGCAGAGCAGGGACTTTGAGATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5081791‑5081638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAG  >  NC_002947/5081683‑5081826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.