New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5081638 = | 46 (1.020) | 6 (0.140) | 6/232 | NT | 12.4% | intergenic (‑52/+51) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase |
? | NC_002947 | 5081683 = | 42 (0.990) | intergenic (‑97/+6) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase |
CCCGCTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGC > NC_002947/5081489‑5081786 | cccGCTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAg > 1:653449/1‑150 (MQ=255) cGCTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAggg < 1:833287/150‑1 (MQ=255) cGCTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAggg < 1:1192154/150‑1 (MQ=255) ctgatgaaacaagccgctgcggcggtgggtggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTg > 2:939524‑M1/145‑150 (MQ=255) gatgaaacaagccgctgcggcggtgggtggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGa < 2:366245‑M1/8‑1 (MQ=255) gatgaaacaagccgctgcggcggtgggtggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGa < 2:757876‑M1/8‑1 (MQ=255) tgtTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGa < 2:992275/150‑1 (MQ=255) aagccgctgcggcggtgggtggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagg < 2:868113‑M1/1‑1 (MQ=255) aagccgctgcggcggtgggtggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagg > 1:868113‑M1/135‑135 (MQ=255) ttGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGcc > 2:664343/1‑150 (MQ=255) aCCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAACAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGa > 1:379389/1‑150 (MQ=255) aCCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGa > 2:102818/1‑150 (MQ=255) ggcaagggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgaaGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGAcc > 1:638177‑M1/115‑150 (MQ=255) gCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCt > 2:981183/1‑150 (MQ=255) ggcggcggccgtccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCAc > 2:179848‑M1/109‑150 (MQ=255) gATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCa < 2:94491/137‑1 (MQ=255) gATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCa > 1:94491/1‑137 (MQ=255) gATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCAc > 1:1102350/1‑150 (MQ=255) cGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACCTGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCAt < 2:920268/150‑1 (MQ=255) tccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCt > 2:707956‑M1/98‑135 (MQ=255) tccggacatggcccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCt < 1:707956‑M1/38‑1 (MQ=255) aaCCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCaaa < 2:1102350/150‑1 (MQ=255) ccGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGt > 2:1011207/1‑150 (MQ=255) cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc > 1:460372/1‑150 (MQ=255) cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc > 2:152093/1‑150 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGAcc < 2:1006603/125‑1 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGAcc > 1:1006603/1‑125 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTccc < 1:981183/150‑1 (MQ=255) ccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTcc > 2:450470‑M1/86‑125 (MQ=255) ccagggtggtggcgtcgacgtcgctgccctggaccaggccctggcgctggccgtgccattcgcagagcagggactttgagatgagGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTcc < 1:450470‑M1/40‑1 (MQ=255) gccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGaa > 1:941792/1‑150 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACgg < 2:554047/88‑1 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACgg > 1:554047/1‑88 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 1:250817/150‑1 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt > 1:1043905/1‑150 (MQ=255) aaaTTTCTGTACGATCACCGCACTTTCATCGGCGCATCAGCCCCTTCACGGCGCCGAGAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATgg < 2:379389/150‑1 (MQ=255) aaaTTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 1:1132444/148‑1 (MQ=255) aaaTTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt > 2:1132444/1‑148 (MQ=255) aaCGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAgg > 1:366245/1‑150 (MQ=255) aCGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAggg > 1:1063965/1‑150 (MQ=255) cGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGc > 2:791850/1‑150 (MQ=255) aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 1:557242/1‑150 (MQ=255) aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 2:256288/1‑150 (MQ=255) aaTGGTGCCTCAGCCCACCTAGGTCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGCCCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg < 1:664343/150‑1 (MQ=255) gTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCa < 2:1043905/150‑1 (MQ=255) tCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGAc > 1:1182839/1‑150 (MQ=255) gCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTc < 2:941792/150‑1 (MQ=255) cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCg > 2:576307/1‑150 (MQ=255) cATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGCCCAGGGTGGTGGCGTCGAc > 2:887983/1‑150 (MQ=255) cAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGcca < 1:152093/150‑1 (MQ=255) aGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGccac < 1:102818/150‑1 (MQ=255) aGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGccac > 1:1003376/1‑150 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTgg < 1:1080980/122‑1 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTgg > 2:1080980/1‑122 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCcaccac < 2:1019649/150‑1 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 2:406933/1‑124 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg < 1:406933/124‑1 (MQ=255) aaaaaaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTgg < 1:256288/150‑1 (MQ=255) aaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCa > 1:121210/1‑150 (MQ=255) aCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCAt > 2:295300/1‑150 (MQ=255) aTGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACgg < 1:791850/150‑1 (MQ=255) aGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGgccgc < 2:1063965/150‑1 (MQ=255) | CCCGCTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGC > NC_002947/5081489‑5081786 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |