| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5081638 = | 46 (1.020) | 6 (0.140) | 6/232 | NT | 12.4% | intergenic (‑52/+51) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase |
| ? | NC_002947 | 5081683 = | 42 (0.990) | intergenic (‑97/+6) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase | |||||
CGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAG > NC_002947/5081538‑5081826 | cGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACCTGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCAt < 2:920268/150‑1 (MQ=255) aaCCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCaaa < 2:1102350/150‑1 (MQ=255) ccGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGt > 2:1011207/1‑150 (MQ=255) cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc > 1:460372/1‑150 (MQ=255) cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc > 2:152093/1‑150 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTccc < 1:981183/150‑1 (MQ=255) gccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGaa > 1:941792/1‑150 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 1:250817/150‑1 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt > 1:1043905/1‑150 (MQ=255) aaaTTTCTGTACGATCACCGCACTTTCATCGGCGCATCAGCCCCTTCACGGCGCCGAGAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATgg < 2:379389/150‑1 (MQ=255) aaaTTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt > 2:1132444/1‑148 (MQ=255) aaaTTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 1:1132444/148‑1 (MQ=255) aaCGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAgg > 1:366245/1‑150 (MQ=255) aCGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAggg > 1:1063965/1‑150 (MQ=255) cGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGc > 2:791850/1‑150 (MQ=255) aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 2:256288/1‑150 (MQ=255) aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 1:557242/1‑150 (MQ=255) aaTGGTGCCTCAGCCCACCTAGGTCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGCCCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg < 1:664343/150‑1 (MQ=255) gTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCa < 2:1043905/150‑1 (MQ=255) tCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGAc > 1:1182839/1‑150 (MQ=255) gCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTc < 2:941792/150‑1 (MQ=255) cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCg > 2:576307/1‑150 (MQ=255) cATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGCCCAGGGTGGTGGCGTCGAc > 2:887983/1‑150 (MQ=255) cAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGcca < 1:152093/150‑1 (MQ=255) aGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGccac > 1:1003376/1‑150 (MQ=255) aGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGccac < 1:102818/150‑1 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTgg < 1:1080980/122‑1 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTgg > 2:1080980/1‑122 (MQ=255) gCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCcaccac < 2:1019649/150‑1 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 2:406933/1‑124 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg < 1:406933/124‑1 (MQ=255) aaaaaaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTgg < 1:256288/150‑1 (MQ=255) aaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCa > 1:121210/1‑150 (MQ=255) aCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCAt > 2:295300/1‑150 (MQ=255) aTGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACgg < 1:791850/150‑1 (MQ=255) aGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGgccgc < 2:1063965/150‑1 (MQ=255) GGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGgccgccg < 1:683953‑M1/150‑1 (MQ=255) gtggagggtctagtggccacacaggccactcccgtccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGgccgccgcc > 2:179848‑M2/43‑150 (MQ=255) TGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGccc > 2:683953‑M1/1‑150 (MQ=255) ggagggtctagtggccacacaggccactcccgtccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTgg < 1:450470‑M2/85‑1 (MQ=255) ggagggtctagtggccacacaggccactcccgtccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTgg > 2:450470‑M2/41‑125 (MQ=255) agggtctagtggccacacaggccactcccgtccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGa < 1:707956‑M2/97‑1 (MQ=255) agggtctagtggccacacaggccactcccgtccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGa > 2:707956‑M2/39‑135 (MQ=255) ggtctagtggccacacaggccactcccgtccaccccTTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGcc > 1:638177‑M2/37‑150 (MQ=255) cTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCAccgc > 1:757876/1‑150 (MQ=255) tgtgGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACcgccgc > 1:791883/1‑150 (MQ=255) gCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCg > 2:773884/1‑150 (MQ=255) gCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCg > 1:304478/1‑150 (MQ=255) gCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCg < 2:557242/150‑1 (MQ=255) cACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGc > 1:1111468/1‑150 (MQ=255) aGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGt < 1:836887/150‑1 (MQ=255) gACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGtt < 2:121210/150‑1 (MQ=255) gACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGtt > 2:799012/1‑150 (MQ=255) aCCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGttt < 2:791883/150‑1 (MQ=255) cTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTtcat < 1:576307/150‑1 (MQ=255) tccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTtcatc < 2:757876‑M2/142‑1 (MQ=255) tccaccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTtcatc < 2:366245‑M2/142‑1 (MQ=255) caccccCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAg > 2:939524‑M2/7‑150 (MQ=255) cCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCtt < 2:868113‑M2/134‑1 (MQ=255) cCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCtt > 1:868113‑M2/2‑135 (MQ=255) | CGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAG > NC_002947/5081538‑5081826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |