New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5362599 =	42 (0.930)	4 (0.090)	4/232	NT	9.4%	coding (1215/1341 nt)	glmM	phosphoglucosamine mutase
	?	NC_002947	5362655 =	38 (0.900)					coding (1159/1341 nt)	glmM	phosphoglucosamine mutase

GGGCGAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5362752‑5362599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATC  >  NC_002947/5362655‑5362770                                                                                                                                                                                                                                                                                GGGCGAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCG                                                                                                                          >  1:1037629/1‑150  GGCGAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGG                                                                                                                         <  1:1018860/150‑1  GGCGAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGG                                                                                                                         >  1:573961/1‑150     GAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGT                                                                                                                      >  2:911143/1‑150                                                                                        CCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGG                                   >  2:1096363/1‑150                                                                                                     CCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGAT                                                                           <  1:179913/97‑1                                                                                                     CCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGAT                                                                           >  2:179913/1‑97                                                                                                                         TGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATC  <  1:1096363/150‑1                                                                                                                                                                                                                                                                                GGGCGAAACCCTGGCCCAGGCCCGTCAGGCCCTGCGCAAGTGCCCGCAGGTGCTGATCAATGTGCGCTTTGGCGCCAGCAAGGTCGACCCGCTGGAGCACCCCGCCGTCAAGGAAGCCAGTGCCAAGGTTACCGAAGCGCTGGCGGGGCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5362752‑5362599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATC  >  NC_002947/5362655‑5362770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.