New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5362599 =	42 (0.930)	4 (0.090)	4/232	NT	9.4%	coding (1215/1341 nt)	glmM	phosphoglucosamine mutase
	?	NC_002947	5362655 =	38 (0.900)					coding (1159/1341 nt)	glmM	phosphoglucosamine mutase

AGATCTGCGCTGGCAAGCGCCTTCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTC  >  NC_002947/5362451‑5362748                                                                                                                                                     |                                                                                                                                                      aGATCTGCGCTGGCAAGCGCCTTCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGAc                                                                                                                                                      >  1:911143/1‑150 (MQ=255)             gCAAGCGCCTTCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCa                                                                                                                                          >  1:1072326/1‑150 (MQ=255)               aaGCGCCTTCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAgc                                                                                                                                        <  2:1055760/150‑1 (MQ=255)                      ttCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCACCGCCAGCGCTTCgg                                                                                                                                 >  2:346718/1‑150 (MQ=255)                             acaAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGCCCCCGCCCCGCCAGCGCTTCGGTAACCtt                                                                                                                          <  1:346718/150‑1 (MQ=255)                               aaaCTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCAACTGGCTTTCGTCCTCGCCCGCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCtttg                                                                                                                        >  2:577607/1‑148 (MQ=255)                                 gatggcgctcaagcgccggggcgaaaccctggcccaggcccgtcaggccctgcgcaagtgcccgcaggtgctgatcaatgtgcgctttggcgccagcaaggtcgacccgctggagcACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCa                                                                                                                      <  1:1096363‑M1/34‑1 (MQ=255)                                   ttCGCCGACCAGTTTGGCCAGCGCTTCNGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACt                                                                                                                    >  1:1086710/1‑150 (MQ=255)                                          aCCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTcc                                                                                                             <  2:1072326/150‑1 (MQ=255)                                            cAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGc                                                                                                                       <  2:630981/138‑1 (MQ=255)                                            cAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGc                                                                                                                       >  1:630981/1‑138 (MQ=255)                                              gTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGa                                                                                                         >  1:701360/1‑150 (MQ=255)                                              gTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTACTTGa                                                                                                         <  1:1008995/150‑1 (MQ=255)                                               tttGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCAGCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGAc                                                                                                        >  2:866683/1‑150 (MQ=255)                                                      aGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCgggg                                                                                                 >  1:236771/1‑150 (MQ=255)                                                         gcTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGc                                                                                              >  1:28122/1‑150 (MQ=255)                                                           ttCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTc                                                                                            >  1:826409/1‑150 (MQ=255)                                                                  tGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCggg                                                                                     <  2:1086710/150‑1 (MQ=255)                                                                  ccaggcccgtcaggccctgcgcaagtgcccgcaggtgctgatcaatgtgcgctttggcgccagcaaggtcgacccgctggagcACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCggg                                                                                     >  2:1096363‑M1/84‑150 (MQ=255)                                                                       ccGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCgcc                                                                                <  2:924329/150‑3 (MQ=255)                                                                       ccGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGAc                                                                                <  2:701360/150‑1 (MQ=255)                                                                            ccTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGc                                                                           <  2:236771/150‑1 (MQ=255)                                                                                  tttCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACcccgccccgc                                                                                                                                            >  2:406647/1‑79 (MQ=255)                                                                                  tttCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACcccgccccgc                                                                                                                                            <  1:406647/79‑1 (MQ=255)                                                                                      gTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCaaa                                                                 >  2:295664/1‑150 (MQ=255)                                                                                         cTCGCCCTCAACCATGACCCGCACCAACGGCTAGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAgcg                                                              >  2:920017/1‑150 (MQ=255)                                                                                          tCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCAGCCCCGACAGCGCTTCGGTAACATTGGCACTGGCTTCCTTGACAGCGGGGTGCTCCACCGGGTCGACCTTGCTCGTGCCAAAgcgc                                                             >  2:209152/1‑150 (MQ=255)                                                                                              ccTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACAt                                                         >  1:601215/1‑150 (MQ=255)                                                                                               cTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACAtt                                                        >  2:573961/1‑150 (MQ=255)                                                                                                    ccATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACAGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCa                                                   >  2:280846/1‑150 (MQ=255)                                                                                                     cATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                  >  1:271300/1‑150 (MQ=255)                                                                                                          atcaatgtgcgctttggcgccagcaaggtcgacccgctggagcACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCggg                                                                                                  >  2:179913‑M1/44‑97 (MQ=255)                                                                                                          atcaatgtgcgctttggcgccagcaaggtcgacccgctggagcACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCggg                                                                                                  <  1:179913‑M1/54‑1 (MQ=255)                                                                                                           ccGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGCCCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                  <  1:521398/144‑1 (MQ=255)                                                                                                           ccGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                  >  2:521398/1‑144 (MQ=255)                                                                                                              cACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCgg                                         <  2:1149228/150‑1 (MQ=255)                                                                                                                           gtcccGGACTTGCGCGACAGCACACAACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTGGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAgg                            <  2:28122/147‑1 (MQ=255)                                                                                                                              ccGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGGGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGcc                         >  2:432208/1‑150 (MQ=255)                                                                                                                                 gACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGa                      <  1:295664/150‑1 (MQ=255)                                                                                                                                  aCTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGAc                     <  1:920017/150‑1 (MQ=255)                                                                                                                                    ttGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACgg                   <  2:271300/150‑1 (MQ=255)                                                                                                                                      gcgcAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAAGCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACgggg                 <  2:826409/150‑2 (MQ=255)                                                                                                                                          aaCAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGc                 <  2:815883/146‑1 (MQ=255)                                                                                                                                          aaCAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGc                 >  1:815883/1‑146 (MQ=255)                                                                                                                                            cAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGc           >  2:1037629/1‑150 (MQ=255)                                                                                                                                              gCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCa         >  2:204261/1‑150 (MQ=255)                                                                                                                                               cacaCGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAg        <  1:204261/150‑1 (MQ=255)                                                                                                                                                  acGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGt     >  1:535115/1‑150 (MQ=255)                                                                                                                                                     ACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTc  >  2:911143‑M1/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AGATCTGCGCTGGCAAGCGCCTTCAGACACAAACTTCGCCGACCAGTTTGGCCAGCGCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTC  >  NC_002947/5362451‑5362748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.