New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5362599 =	42 (0.930)	4 (0.090)	4/232	NT	9.4%	coding (1215/1341 nt)	glmM	phosphoglucosamine mutase
	?	NC_002947	5362655 =	38 (0.900)					coding (1159/1341 nt)	glmM	phosphoglucosamine mutase

GCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCAGCACCTGCAGCGCGGC  >  NC_002947/5362507‑5362787                                                                                                                                                     |                                                                                                                                     gcTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGc                                                                                                                                     >  1:28122/1‑150 (MQ=255)   ttCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTc                                                                                                                                   >  1:826409/1‑150 (MQ=255)          tGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCggg                                                                                                                            <  2:1086710/150‑1 (MQ=255)          ccaggcccgtcaggccctgcgcaagtgcccgcaggtgctgatcaatgtgcgctttggcgccagcaaggtcgacccgctggagcACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCggg                                                                                                                            >  2:1096363‑M1/84‑150 (MQ=255)               ccGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCgcc                                                                                                                       <  2:924329/150‑3 (MQ=255)               ccGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGAc                                                                                                                       <  2:701360/150‑1 (MQ=255)                    ccTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGc                                                                                                                  <  2:236771/150‑1 (MQ=255)                              gTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCaaa                                                                                                        >  2:295664/1‑150 (MQ=255)                                 cTCGCCCTCAACCATGACCCGCACCAACGGCTAGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAgcg                                                                                                     >  2:920017/1‑150 (MQ=255)                                  tCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCAGCCCCGACAGCGCTTCGGTAACATTGGCACTGGCTTCCTTGACAGCGGGGTGCTCCACCGGGTCGACCTTGCTCGTGCCAAAgcgc                                                                                                    >  2:209152/1‑150 (MQ=255)                                      ccTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACAt                                                                                                >  1:601215/1‑150 (MQ=255)                                       cTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACAtt                                                                                               >  2:573961/1‑150 (MQ=255)                                            ccATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACAGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCa                                                                                          >  2:280846/1‑150 (MQ=255)                                             cATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                                                         >  1:271300/1‑150 (MQ=255)                                                   ccGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGCCCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                                                         <  1:521398/144‑1 (MQ=255)                                                   ccGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAg                                                                                         >  2:521398/1‑144 (MQ=255)                                                      cACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCgg                                                                                <  2:1149228/150‑1 (MQ=255)                                                                   gtcccGGACTTGCGCGACAGCACACAACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTGGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAgg                                                                   <  2:28122/147‑1 (MQ=255)                                                                      ccGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGGGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGcc                                                                >  2:432208/1‑150 (MQ=255)                                                                         gACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGa                                                             <  1:295664/150‑1 (MQ=255)                                                                          aCTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGAc                                                            <  1:920017/150‑1 (MQ=255)                                                                            ttGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACgg                                                          <  2:271300/150‑1 (MQ=255)                                                                              gcgcAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAAGCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACgggg                                                        <  2:826409/150‑2 (MQ=255)                                                                                  cccgctggagcaccccgccgtcaaggaagccagtgccaaggttaccgaagcgctggcggggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTgg                                                    >  2:1096363‑M2/68‑150 (MQ=255)                                                                                  aaCAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGc                                                        <  2:815883/146‑1 (MQ=255)                                                                                  aaCAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGc                                                        >  1:815883/1‑146 (MQ=255)                                                                                    cAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGc                                                  >  2:1037629/1‑150 (MQ=255)                                                                                      gCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCa                                                >  2:204261/1‑150 (MQ=255)                                                                                       cacaCGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAg                                               <  1:204261/150‑1 (MQ=255)                                                                                          acGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGt                                            >  1:535115/1‑150 (MQ=255)                                                                                             ACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTc                                         >  2:911143‑M1/1‑150 (MQ=255)                                                                                               cccgccgtcaaggaagccagtgccaaggttaccgaagcgctggcggggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGAt                                                                                            >  2:179913‑M2/55‑97 (MQ=255)                                                                                               cccgccgtcaaggaagccagtgccaaggttaccgaagcgctggcggggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGAt                                                                                            <  1:179913‑M2/43‑1 (MQ=255)                                                                                                CCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGcc                                      <  1:1018860‑M1/150‑1 (MQ=255)                                                                                                CCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGcc                                      >  1:573961‑M1/1‑150 (MQ=255)                                                                                                 CGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGccc                                     >  1:1037629‑M1/1‑150 (MQ=255)                                                                                                        ccAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCt                              >  1:232053/1‑150 (MQ=255)                                                                                                         cAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCtt                             <  2:232053/150‑1 (MQ=255)                                                                                                           gcgcTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGa                           <  2:810616/150‑1 (MQ=255)                                                                                                               ttCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAgcgc                       >  1:227809/1‑150 (MQ=255)                                                                                                               ttCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAgcgc                       <  2:1018860/150‑1 (MQ=255)                                                                                                                   tgccaaggttaccgaagcgctggcggggcggggtGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATc                   <  1:1096363‑M2/116‑1 (MQ=255)                                                                                                                   gTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATc                   >  1:1194009/1‑150 (MQ=255)                                                                                                                   gTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATc                   <  2:227809/150‑1 (MQ=255)                                                                                                                    tAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCa                  >  2:489040/1‑150 (MQ=255)                                                                                                                     aaCCTTGGCACAGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTCAAGCGccggggc                 <  1:280846/150‑6 (MQ=255)                                                                                                                        cTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCAGCAc              >  1:250589/1‑150 (MQ=255)                                                                                                                                  gCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCAGCACCTGCAGcgcg    >  2:645778/1‑150 (MQ=255)                                                                                                                                    ttCCTTGACGGCGGGGTGCACCAGGGGGTCGACCTGGCTGTCGCCAATGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCAGCACCTGCAGCGCGGc  >  2:865266/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                     GCTTCAGCATGGGCCCGCACCTGGCTTTCGTCCTCGCCCTCAACCATGACCCGCACCAACGGCTCGGTACCGGACTTGCGCAACAGCACACGACCCCGCCCCGCCAGCGCTTCGGTAACCTTGGCACTGGCTTCCTTGACGGCGGGGTGCTCCAGCGGGTCGACCTTGCTGGCGCCAAAGCGCACATTGATCAGCACCTGCGGGCACTTGCGCAGGGCCTGACGGGCCTGGGCCAGGGTTTCGCCCCGGCGCTTGAGCGCCATCAGCACCTGCAGCGCGGC  >  NC_002947/5362507‑5362787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.