New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5377753 =	42 (0.930)	4 (0.090)	4/238	NT	9.5%	coding (519/558 nt)	grpE	heat shock protein GrpE
	?	NC_002947	5377792 =	36 (0.830)					coding (480/558 nt)	grpE	heat shock protein GrpE

CACGGCCAGCCGTTCAACCCTGAGCACCACCAGGCCATGGCCATGCAGGAAAACGCCGAGGTCGAGCCAAACAGCGTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5377905‑5377753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAGG  >  NC_002947/5377792‑5377939                                                                                                                                                                                                                                                                                                               CACGGCCAGCCGTTCAACCCTGAGCACCACCAGGCCATGGCCATGCAGGAAAACGCCGAGGTCGAGCCAAACAGCGTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAG                                                                                                                                                         <  1:1095799/150‑1  ACGGCCAGCCGTTCAACCCTGAGCACCACCAGGCCATGGCCATGCAGGAAAACGCCGAGGTCGAGCCAAACAGCGTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGG                                                                                                                                                        <  1:829687/150‑1                                                                                                                 GCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAAC                                               >  1:1088417/1‑144                                                                                                                 GCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAAC                                               <  2:1088417/144‑1                                                                                                                    GCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCAT                                                                        >  1:240468/1‑116                                                                                                                    GCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCAT                                                                        <  2:240468/116‑1                                                                                                                                                        CGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAGG  <  1:678937/150‑1                                                                                                                                                         GGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACG                                                                                                              >  1:646180/1‑41                                                                                                                                                         GGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACG                                                                                                              <  2:646180/41‑1                                                                                                                                                                                                                                                                                                               CACGGCCAGCCGTTCAACCCTGAGCACCACCAGGCCATGGCCATGCAGGAAAACGCCGAGGTCGAGCCAAACAGCGTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5377905‑5377753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAGG  >  NC_002947/5377792‑5377939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.