New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5377753 =	42 (0.930)	4 (0.090)	4/238	NT	9.5%	coding (519/558 nt)	grpE	heat shock protein GrpE
	?	NC_002947	5377792 =	36 (0.830)					coding (480/558 nt)	grpE	heat shock protein GrpE

CGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAGG  >  NC_002947/5377646‑5377939                                                                                                                                                   |                                                                                                                                                    cGACTACTTTGGCAAACTGCGGTAATACTTGAAGGCTTGACACCTAGATCGGGATGCCCCGAAGGCCTTCAAGTCTTTTCATTGATCGAGGGTTGCGCCGCGCTCAGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCg                                                                                                                                                  <  1:509222/150‑1 (MQ=255)     tactTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGTATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTca                                                                                                                                              <  2:93738/150‑1 (MQ=255)     tactTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTca                                                                                                                                              >  2:148507/1‑150 (MQ=255)     gttcaaccctgagcaccaccaggccatggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggcggc                                                                                                                                                    >  1:1088417‑M1/104‑144 (MQ=255)     gttcaaccctgagcaccaccaggccatggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggcggc                                                                                                                                                    <  2:1088417‑M1/41‑1 (MQ=255)       ctTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTcagc                                                                                                                                            <  1:1176430/150‑1 (MQ=255)                       tAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGt                                                                                                                                        >  1:612442/1‑138 (MQ=255)                       tAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGt                                                                                                                                        <  2:612442/138‑1 (MQ=255)                                                      aTGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGCAGGGACGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTc                                                                                             >  1:509836/1‑150 (MQ=255)                                                                  aTTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTg                                                                                 >  1:234472/1‑150 (MQ=255)                                                                         gCCTTTTCATTGATCGAGGGTAGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGCGCGCAGCAGGCGGCCGTTCAGAACGTAACCCTTCTGGAACACGTTCAACACTCTGTTTGGCTCGACCTCGGCGTTTTCCTTcatggcc                                                                          >  2:472347/1‑150 (MQ=255)                                                                               tCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCatggccatggcc                                                                    <  2:234472/150‑1 (MQ=255)                                                                                cATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggcc                                                                          >  2:95137/1‑143 (MQ=255)                                                                                cATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggcc                                                                          <  1:95137/143‑1 (MQ=255)                                                                                 aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCaa                                                                                                                  <  1:687639/102‑1 (MQ=255)                                                                                 aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCaa                                                                                                                  >  2:687639/1‑102 (MQ=255)                                                                                 aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                                                                    <  1:376602/132‑1 (MQ=255)                                                                                 aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                                                                    >  2:376602/1‑132 (MQ=255)                                                                                 aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtg                                                                  >  2:1017117/1‑150 (MQ=255)                                                                                     aTCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtggtgg                                                              >  2:678937/1‑150 (MQ=255)                                                                                     aTCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtggtgg                                                              >  2:934569/1‑150 (MQ=255)                                                                                      tCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACAACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTggtggt                                                             >  1:1084642/1‑150 (MQ=255)                                                                                        gAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGc                                                           >  1:193793/1‑150 (MQ=255)                                                                                            gTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAg                                                       >  1:222457/1‑150 (MQ=255)                                                                                              ggcgcCGAGCGCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                                                                    <  1:358392/118‑1 (MQ=255)                                                                                              ggcgcCGAGCGCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                                                                    >  2:358392/2‑119 (MQ=255)                                                                                                   cgcgCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAaca                                                                                                                >  1:386856/1‑86 (MQ=255)                                                                                                   cgcgCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAaca                                                                                                                <  2:386856/86‑1 (MQ=255)                                                                                                      gcTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGaa                                                                                                                           >  2:241724/1‑72 (MQ=255)                                                                                                      gcTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGaa                                                                                                                           <  1:241724/72‑1 (MQ=255)                                                                                                          ggCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTgg                                         <  2:222457/150‑1 (MQ=255)                                                                                                          gccgcctgctgcgccccgccatggtggtggtcagcaaggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAAc                                               >  1:1088417‑M2/42‑144 (MQ=255)                                                                                                          gccgcctgctgcgccccgccatggtggtggtcagcaaggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAAc                                               <  2:1088417‑M2/103‑1 (MQ=255)                                                                                                           gcgcCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGc                                        <  1:148507/150‑1 (MQ=255)                                                                                                             gcctgctgcgccccgccatggtggtggtcagcaaggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggccat                                                                        <  2:240468‑M2/78‑1 (MQ=255)                                                                                                             gcctgctgcgccccgccatggtggtggtcagcaaggcgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggccat                                                                        >  1:240468‑M2/39‑116 (MQ=255)                                                                                                              CCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGt                                     <  1:829687‑M1/150‑1 (MQ=255)                                                                                                               CTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTg                                    <  1:1095799‑M1/150‑1 (MQ=255)                                                                                                                        caccaccaTGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGAc                           >  1:975773/1‑150 (MQ=255)                                                                                                                        caccaccaTGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGAc                           >  1:415746/1‑150 (MQ=255)                                                                                                                        caccaccaTGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGAc                           >  2:1050885/1‑150 (MQ=255)                                                                                                                              caTGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTc                     >  2:216300/1‑150 (MQ=255)                                                                                                                                 ggCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCaaa                  <  2:829687/150‑2 (MQ=255)                                                                                                                                     gggCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTg              <  2:975773/150‑1 (MQ=255)                                                                                                                                     gggCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTg              <  2:1095799/150‑1 (MQ=255)                                                                                                                                         gcagcaGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAgc          >  2:134987/1‑150 (MQ=255)                                                                                                                                           agcagGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtgg                                                                 >  2:892414/1‑93 (MQ=255)                                                                                                                                           agcagGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtgg                                                                 <  1:892414/93‑1 (MQ=255)                                                                                                                                                 cgGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAgg  <  1:678937‑M2/148‑1 (MQ=255)                                                                                                                                                  gGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACg                                                                                                              <  2:646180‑M2/40‑1 (MQ=255)                                                                                                                                                  gGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACg                                                                                                              >  1:646180‑M2/2‑41 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGCCGTGCGGGTCGACGGCTTCAAGGTTGTAGCGCTTGAGG  >  NC_002947/5377646‑5377939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.