New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5377753 =	42 (0.930)	4 (0.090)	4/238	NT	9.5%	coding (519/558 nt)	grpE	heat shock protein GrpE
	?	NC_002947	5377792 =	36 (0.830)					coding (480/558 nt)	grpE	heat shock protein GrpE

TTACCCATGTTAACTCTCCCGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGC  >  NC_002947/5377605‑5377901                                                                                                                                                     |                                                                                                                                                     cctcaagcgctacaaccttgaagccgtcgacccgcacggccagccgttcaaccctgagcaccaccaggccatggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggccg                                                                                                                                                     <  1:678937‑M1/2‑1 (MQ=255)          ttAACTCTCCCGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGa                                                                                                                                            <  2:949628/150‑1 (MQ=255)                  cccGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGaccaccacc                                                                                                                                    <  1:949785/150‑1 (MQ=255)                  cccGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGaccaccacc                                                                                                                                    >  2:846901/1‑150 (MQ=255)                   ccGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgc                                                                                                                                                      <  2:326765/131‑1 (MQ=255)                   ccGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgc                                                                                                                                                      >  1:326765/1‑131 (MQ=255)                   ccGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGAccaccacca                                                                                                                                   >  1:862884/1‑150 (MQ=255)                         cTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCgg                                                                                                                             <  2:1110177/150‑1 (MQ=255)                         cTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTGTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCgg                                                                                                                             <  2:268143/150‑1 (MQ=255)                               tttGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCgca                                                                                                                       <  1:54953/150‑1 (MQ=255)                                  ggTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCgcagca                                                                                                                    <  2:862884/150‑1 (MQ=255)                                          cGACTACTTTGGCAAACTGCGGTAATACTTGAAGGCTTGACACCTAGATCGGGATGCCCCGAAGGCCTTCAAGTCTTTTCATTGATCGAGGGTTGCGCCGCGCTCAGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCg                                                                                                            <  1:509222/150‑1 (MQ=255)                                              tactTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGTATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTca                                                                                                        <  2:93738/150‑1 (MQ=255)                                              tactTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTca                                                                                                        >  2:148507/1‑150 (MQ=255)                                              gttcaaccctgagcaccaccaggccatggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggcggc                                                                                                              <  2:1088417‑M1/41‑1 (MQ=255)                                              gttcaaccctgagcaccaccaggccatggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggcggc                                                                                                              >  1:1088417‑M1/104‑144 (MQ=255)                                               actTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCt                                                                                                                                              <  2:673501/111‑1 (MQ=255)                                               actTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCt                                                                                                                                              >  1:673501/1‑111 (MQ=255)                                                ctTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTcagc                                                                                                      <  1:1176430/150‑1 (MQ=255)                                                 tttGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgc                                                                                                                                                      <  2:391146/101‑1 (MQ=255)                                                 tttGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCACGAATGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgc                                                                                                                                                      >  1:391146/1‑101 (MQ=255)                                                           tGCGGTAATACTTGAAGGCTTGACACCAAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTg                                                                                                                                                <  1:1109375/97‑1 (MQ=255)                                                           tGCGGTAATACTTGAAGGCTTGACACCAAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTg                                                                                                                                                >  2:1109375/1‑97 (MQ=255)                                                                tAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGt                                                                                                  >  1:612442/1‑138 (MQ=255)                                                                tAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGt                                                                                                  <  2:612442/138‑1 (MQ=255)                                                                       atggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggc                                                                                                                 <  2:240468‑M1/38‑1 (MQ=255)                                                                       atggccatgcaggaaaacgccgaggtcgagccaaacagcgtgttgaacgtgttccagaagggttacctgctgaacggcCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAggc                                                                                                                 >  1:240468‑M1/79‑116 (MQ=255)                                                                        gAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGac                                                                                                                                           >  2:291536/1‑89 (MQ=255)                                                                        gAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGac                                                                                                                                           <  1:291536/89‑1 (MQ=255)                                                                         aaGGCTTGACACCTAGGTGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgcgc                                                                                                                                                    >  1:1086779/1‑79 (MQ=255)                                                                         aaGGCTTGACACCTAGGTGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGgcgc                                                                                                                                                    <  2:1086779/79‑1 (MQ=255)                                                                                               aTGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGCAGGGACGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTc                                                       >  1:509836/1‑150 (MQ=255)                                                                                                           aTTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTg                                           >  1:234472/1‑150 (MQ=255)                                                                                                             cgtgttgaacgtgttccagaagggttacctgctgaacggcc                                                                                                                                                      >  1:646180‑M1/41‑41 (MQ=255)                                                                                                             cgtgttgaacgtgttccagaagggttacctgctgaacggcc                                                                                                                                                      <  2:646180‑M1/1‑1 (MQ=255)                                                                                                                  gCCTTTTCATTGATCGAGGGTAGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGCGCGCAGCAGGCGGCCGTTCAGAACGTAACCCTTCTGGAACACGTTCAACACTCTGTTTGGCTCGACCTCGGCGTTTTCCTTcatggcc                                    >  2:472347/1‑150 (MQ=255)                                                                                                                        tCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCatggccatggcc                              <  2:234472/150‑1 (MQ=255)                                                                                                                         cATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggcc                                    >  2:95137/1‑143 (MQ=255)                                                                                                                         cATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGcatggcc                                    <  1:95137/143‑1 (MQ=255)                                                                                                                          aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCaa                                                                            >  2:687639/1‑102 (MQ=255)                                                                                                                          aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCaa                                                                            <  1:687639/102‑1 (MQ=255)                                                                                                                          aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                              >  2:376602/1‑132 (MQ=255)                                                                                                                          aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                              <  1:376602/132‑1 (MQ=255)                                                                                                                          aTTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtg                            >  2:1017117/1‑150 (MQ=255)                                                                                                                              aTCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtggtgg                        >  2:934569/1‑150 (MQ=255)                                                                                                                              aTCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCtggtgg                        >  2:678937/1‑150 (MQ=255)                                                                                                                               tCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACAACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTggtggt                       >  1:1084642/1‑150 (MQ=255)                                                                                                                                 gAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGc                     >  1:193793/1‑150 (MQ=255)                                                                                                                                     gTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAg                 >  1:222457/1‑150 (MQ=255)                                                                                                                                       ggcgcCGAGCGCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                              <  1:358392/118‑1 (MQ=255)                                                                                                                                       ggcgcCGAGCGCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTc                                              >  2:358392/2‑119 (MQ=255)                                                                                                                                            cgcgCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAaca                                                                          >  1:386856/1‑86 (MQ=255)                                                                                                                                            cgcgCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAaca                                                                          <  2:386856/86‑1 (MQ=255)                                                                                                                                               gcTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGaa                                                                                     <  1:241724/72‑1 (MQ=255)                                                                                                                                               gcTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGaa                                                                                     >  2:241724/1‑72 (MQ=255)                                                                                                                                                   ggCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTgg   <  2:222457/150‑1 (MQ=255)                                                                                                                                                    gcgcCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGc  <  1:148507/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTACCCATGTTAACTCTCCCGAAACTTGAATTTGGTAGCAGCGACTACTTTGGCCAACTGCGGTAATACTTGAAGGCTTGACACCTAGATGGGGATGCCCCGAAGGATTTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATGGCCTGGTGGTGCTCAGGGTTGAACGGCTGGC  >  NC_002947/5377605‑5377901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.