New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5488624 =	59 (1.310)	4 (0.090)	4/240	NT	6.9%	coding (1905/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	5488652 =	51 (1.170)					coding (1933/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator

AGGTGCGCCTTGGTGCGCAAAAGGGCCAGAGCCTCCTTGCCTGACGGCACCGCGCTGACGTTCATGCCCCAGGCACTGCACTGCTGTACAAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5488776‑5488624 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAACGTCAGCGCGGTGCCGTCAGGCAAGGAGGCTCTGGCC  >  NC_002947/5488652‑5488753                                                                                                                                                                                                                                                                 AGGTGCGCCTTGGTGCGCAAAAGGGCCAGAGCCTCCTTGCCTGACGGCACCGCGCTGACGTTCATGCCCCAGGCACTGCACTGCTGTACAAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGG                                                                                                           <  1:804612/150‑1                                                                                ACTGCTGTACAAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGG                                                                                                           <  1:579008/71‑1                                                                                ACTGCTGTACAAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGG                                                                                                           >  2:579008/1‑71                                                                                          AAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTG                                                                                                        <  1:336443/64‑1                                                                                          AAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTG                                                                                                        >  2:336443/1‑64                                                                                                                     GTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTGGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAAC                                      <  1:238372/103‑1                                                                                                                     GTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTGGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAAC                                      >  2:238372/1‑103                                                                                                                      TCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTGGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAACGTCAGCGCGGTGCCGTCAGGCAAGGAGGCTCTGGCC  >  1:79586/1‑138                                                                                                                      TCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTGGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAACGTCAGCGCGGTGCCGTCAGGCAAGGAGGCTCTGGCC  <  2:79586/138‑1                                                                                                                                                                                                                                                                 AGGTGCGCCTTGGTGCGCAAAAGGGCCAGAGCCTCCTTGCCTGACGGCACCGCGCTGACGTTCATGCCCCAGGCACTGCACTGCTGTACAAGCACCTTGCGGCACGTGTCGTTGTCGTCGACCACCAGCACGCGGGCATCGCGCAGCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5488776‑5488624 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGTGGTCGACGACAACGACACGTGCCGCAAGGTGCTTGTACAGCAGTGCAGTGCCTGGGGCATGAACGTCAGCGCGGTGCCGTCAGGCAAGGAGGCTCTGGCC  >  NC_002947/5488652‑5488753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.