| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5505179 | 33 (0.730) | 7 (0.160) | 7/236 | NT | 17.4% | intergenic (+14/‑43) | oprC/PP_4839 | copper receptor OprC/iron‑regulated membrane protein |
| ? | NC_002947 | = 5505187 | 35 (0.820) | intergenic (+22/‑35) | oprC/PP_4839 | copper receptor OprC/iron‑regulated membrane protein | |||||
GTCGACAACCTGTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5505025‑5505179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaACCGAAGCTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTGACCGGCTGTGGATCTGTAGCCGGGTAGCCGAACCCGGCGTTCCCGGCCAGGTTCAAGTGCTCGGCGTAGGTTTTGTC < NC_002947/5505187‑5505040 GTCGACAACCTGTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGG > 2:1072315/1‑150 ACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGC > 2:489404/1‑150 ACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGCGCCCGTTGT < 1:489404/150‑1 TTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGCGCCCGTTGTTGT < 1:587789/142‑1 TTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGCGCCCGTTGTTGT > 2:587789/1‑142 AGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGCGCCCGTTGTT < 1:587621/75‑1 AGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCTGCGCCCGTTGTT > 2:587621/1‑75 ACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTAGCCGGCTGTGGATCTGTAGCCGGGTAGCCGAACCCGGCGTTCCCGGCCAGG > 1:866081/1‑150 CAACCGAAGCTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTGACCGGCTGTGGATCTGTAGCCGGGTAGCCGAACCCGGCGTTCCCGGCCAGGTTCAAGTGCTCGGCGTAGGTTTTGTC < 1:78436/150‑1 AACCGAAGCTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTGACCGGCTGTGGATCT < 1:291721/87‑1 AACCGAAGCTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTGACCGGCTGTGGATCT > 2:291721/1‑87 GTCGACAACCTGTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5505025‑5505179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaACCGAAGCTGCGCCCGTTGTTGTCAGAAGCTGAAGTCGACCTTGGTCCAGAAGGTCCTGCCTGGCTCATTGACCGGCTGTGGATCTGTAGCCGGGTAGCCGAACCCGGCGTTCCCGGCCAGGTTCAAGTGCTCGGCGTAGGTTTTGTC < NC_002947/5505187‑5505040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |