New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5505179	33 (0.730)	7 (0.160)	7/236	NT	17.4%	intergenic (+14/‑43)	oprC/PP_4839	copper receptor OprC/iron‑regulated membrane protein
	?	NC_002947	= 5505187	35 (0.820)					intergenic (+22/‑35)	oprC/PP_4839	copper receptor OprC/iron‑regulated membrane protein

GACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGATCATCTACTT  >  NC_002947/5505040‑5505334                                                                                                                                                    |                                                                                                                                                    gACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTtg                                                                                                                                                   <  1:78436‑M2/150‑3 (MQ=255)            cGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGc                                                                                                                                        <  1:43413/150‑1 (MQ=255)                gAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGt                                                                                                                                    >  1:706495/1‑150 (MQ=255)                           ccTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGCTAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCtgcgcccgttgttgtcagaagctgaagt                                                                                                                         >  1:866081‑M2/1‑122 (MQ=255)                              ggCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGtt                                                                                                                      <  2:417081/150‑1 (MQ=255)                                    gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAag                                                                                                                            <  2:506896/138‑1 (MQ=255)                                    gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAag                                                                                                                            >  1:506896/1‑138 (MQ=255)                                    gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGAACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATg                                                                                                                >  1:638273/1‑150 (MQ=255)                                     aaCGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATga                                                                                                               >  1:778551/1‑150 (MQ=255)                                                cGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACAcgc                                                                                                    <  1:666787/150‑1 (MQ=255)                                                     aCCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGtctc                                                                                               <  2:105806/150‑1 (MQ=255)                                                               aGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTt                                                                                                                                                    >  2:291721‑M2/1‑86 (MQ=255)                                                               aGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTt                                                                                                                                                    <  1:291721‑M2/87‑2 (MQ=255)                                                                gATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAAcc                                                                                    >  2:362599/1‑150 (MQ=255)                                                                       aGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAAcctggcctg                                                                             >  1:537475/1‑150 (MQ=255)                                                                            ttCAATGAGCAAGGCAGGACCTTCTGGACCAATGTCGACTTCAGCTTCTGACAACAACGGGCGCATCTTCTGTTGCTCCTTTCAGCTGGTCAAAAAATGAGTTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGTCCTGGCGtt                                                                        <  2:536317/149‑1 (MQ=255)                                                                            gTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGtt                                                                        <  1:362599/150‑1 (MQ=255)                                                                               aaTGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGc                                                                     >  1:493308/1‑150 (MQ=255)                                                                                aTGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCa                                                                    <  1:410826/150‑1 (MQ=255)                                                                                     ccAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTc                                                                                                                     >  1:660997/1‑96 (MQ=255)                                                                                     ccAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTc                                                                                                                     <  2:660997/96‑1 (MQ=255)                                                                                      caggcaggACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTa                                                              >  1:333672/1‑150 (MQ=255)                                                                                             gACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCgggg                                                       <  2:537475/150‑1 (MQ=255)                                                                                                cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCAttttt                                                               <  2:404274/139‑1 (MQ=255)                                                                                                cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCAttttt                                                               >  1:404274/1‑139 (MQ=255)                                                                                                cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTg                                                    >  1:890843/1‑150 (MQ=255)                                                                                                 ttCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCANCTTNGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGt                                                   >  1:966416/1‑150 (MQ=255)                                                                                                       aCCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTgg                                             <  2:638273/150‑1 (MQ=255)                                                                                                         cAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcc                                           >  1:427167/1‑150 (MQ=255)                                                                                                         cAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcc                                           >  2:268226/1‑150 (MQ=255)                                                                                                           aGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcccc                                         >  1:57605/1‑150 (MQ=255)                                                                                                                 aCTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCAt                                   <  2:78436/150‑1 (MQ=255)                                                                                                                            tGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATACTGTTgg                        >  2:1179189/1‑150 (MQ=255)                                                                                                                              acaacaACGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaa                              <  1:587789‑M2/142‑120 (MQ=255)                                                                                                                              acaacaACGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaa                              >  2:587789‑M2/1‑23 (MQ=255)                                                                                                                                aacaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcct                                                                                               >  2:587621‑M2/1‑21 (MQ=255)                                                                                                                                aacaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcct                                                                                               <  1:587621‑M2/75‑55 (MQ=255)                                                                                                                                aacaacGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAAt                    >  1:698082/1‑150 (MQ=255)                                                                                                                                 acaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaagtgctcggcgt                   <  1:489404‑M2/150‑131 (MQ=255)                                                                                                                                      gggCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCgg              <  2:890843/150‑1 (MQ=255)                                                                                                                                        gcgcAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGa            >  1:1032819/1‑150 (MQ=255)                                                                                                                                        gcgcAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTACCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGa            >  1:193277/1‑150 (MQ=255)                                                                                                                                          gcAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaagtgctcggcgtaggttttgt          >  2:489404‑M2/1‑11 (MQ=255)                                                                                                                                            aGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGatcat        <  2:333672/150‑1 (MQ=255)                                                                                                                                             gCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCTGGGCTGTTCGTGTCCCCGTTCATGATCCTGTTGGCAATCACCGGGatcatc       <  1:1179189/150‑1 (MQ=255)                                                                                                                                                  ggTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGATCATCTACtt  <  2:706495/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGATCATCTACTT  >  NC_002947/5505040‑5505334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.