| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5505179 | 33 (0.730) | 7 (0.160) | 7/236 | NT | 17.4% | intergenic (+14/‑43) | oprC/PP_4839 | copper receptor OprC/iron‑regulated membrane protein |
| ? | NC_002947 | = 5505187 | 35 (0.820) | intergenic (+22/‑35) | oprC/PP_4839 | copper receptor OprC/iron‑regulated membrane protein | |||||
GTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGATCAT > NC_002947/5505036‑5505328 | gTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGTCTACAGAGGCACAGCCCGTTCATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCg < 1:990776/150‑1 (MQ=255) ttCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCgg > 2:43413/1‑150 (MQ=255) gACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTtg < 1:78436‑M2/150‑3 (MQ=255) aCAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgc > 2:489404‑M1/1‑139 (MQ=255) aCGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgcgcccgttgt < 1:489404‑M1/150‑21 (MQ=255) cGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGc < 1:43413/150‑1 (MQ=255) gAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGt > 1:706495/1‑150 (MQ=255) ttGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgcgcccgttgttgt < 1:587789‑M1/142‑24 (MQ=255) ttGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgcgcccgttgttgt > 2:587789‑M1/1‑119 (MQ=255) ccTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGCTAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAACCGAAGCtgcgcccgttgttgtcagaagctgaagt > 1:866081‑M2/1‑122 (MQ=255) ggCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGtt < 2:417081/150‑1 (MQ=255) gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAag < 2:506896/138‑1 (MQ=255) gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAag > 1:506896/1‑138 (MQ=255) gAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGAACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATg > 1:638273/1‑150 (MQ=255) aaCGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATga > 1:778551/1‑150 (MQ=255) cGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACAcgc < 1:666787/150‑1 (MQ=255) aCCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGtctc < 2:105806/150‑1 (MQ=255) aGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTt < 1:291721‑M2/87‑2 (MQ=255) aGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTt > 2:291721‑M2/1‑86 (MQ=255) gATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAAcc > 2:362599/1‑150 (MQ=255) aGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAAcctggcctg > 1:537475/1‑150 (MQ=255) ttCAATGAGCAAGGCAGGACCTTCTGGACCAATGTCGACTTCAGCTTCTGACAACAACGGGCGCATCTTCTGTTGCTCCTTTCAGCTGGTCAAAAAATGAGTTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGTCCTGGCGtt < 2:536317/149‑1 (MQ=255) gTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGtt < 1:362599/150‑1 (MQ=255) aaTGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGc > 1:493308/1‑150 (MQ=255) aTGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCa < 1:410826/150‑1 (MQ=255) ccAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTc > 1:660997/1‑96 (MQ=255) ccAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTc < 2:660997/96‑1 (MQ=255) caggcaggACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTa > 1:333672/1‑150 (MQ=255) aggcaggACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgcgcccgttgtt > 2:587621‑M1/1‑54 (MQ=255) aggcaggACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAaccgaagctgcgcccgttgtt < 1:587621‑M1/75‑22 (MQ=255) gACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCgggg < 2:537475/150‑1 (MQ=255) cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCAttttt > 1:404274/1‑139 (MQ=255) cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCAttttt < 2:404274/139‑1 (MQ=255) cTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTg > 1:890843/1‑150 (MQ=255) ttCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCANCTTNGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGt > 1:966416/1‑150 (MQ=255) aCCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTgg < 2:638273/150‑1 (MQ=255) cAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcc > 2:268226/1‑150 (MQ=255) cAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcc > 1:427167/1‑150 (MQ=255) aGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGcccc > 1:57605/1‑150 (MQ=255) aCTTCAGCTTCTGACAACAACGGGCGCAgcttcggttgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattagccggctgtggatctgtagccgggtagccgaacccggcgttcccggccagg > 1:866081‑M1/1‑28 (MQ=255) aCTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCAt < 2:78436/150‑1 (MQ=255) tGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATACTGTTgg > 2:1179189/1‑150 (MQ=255) acaacaACGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaa > 2:587789‑M2/1‑23 (MQ=255) acaacaACGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaa < 1:587789‑M2/142‑120 (MQ=255) aacaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcct < 1:587621‑M2/75‑55 (MQ=255) aacaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcct > 2:587621‑M2/1‑21 (MQ=255) aacaacGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAAt > 1:698082/1‑150 (MQ=255) acaacGGGCGCAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaagtgctcggcgt < 1:489404‑M2/150‑131 (MQ=255) gggCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCgg < 2:890843/150‑1 (MQ=255) gcgcAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGa > 1:1032819/1‑150 (MQ=255) gcgcAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTACCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGa > 1:193277/1‑150 (MQ=255) gcAGCTTCGGTtgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaagtgctcggcgtaggttttgt > 2:489404‑M2/1‑11 (MQ=255) cAaccgaagctgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatctgtagccgggtagccgaacccggcgttcccggccaggttcaagtgctcggcgtaggttttgtc < 1:78436‑M1/150‑149 (MQ=255) aaccgaagctgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatct > 2:291721‑M1/1‑1 (MQ=255) aaccgaagctgcgcccgttgttgtcagaagctgaagtcgaccttggtccagaaggtcctgcctggctcattgaccggctgtggatct < 1:291721‑M1/87‑87 (MQ=255) aGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGatcat < 2:333672/150‑1 (MQ=255) | GTTCGACAAAACCTACGCCGAGCACTTGAACCTGGCCGGGAACGCCGGGTTCGGCTACCCGGCTACAGATCCACAGCCGGTCAATGAGCCAGGCAGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGACAACAACGGGCGCAGCTTCGGTTGCGCCTTTCAGCTGGTCAAAAAAGGAGGTTCCCATGAGAGGAACACGCGTCTCTTTCTATAACCTGGCCTGGCGTTGGCATTTTTATGCGGGGCTGTTCGTGGCCCCGTTCATGATCCTGTTGGCAATCACCGGGATCAT > NC_002947/5505036‑5505328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |