| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5508216 | 49 (1.090) | 4 (0.090) | 4/236 | NT | 7.7% | intergenic (+22/‑228) | cycA/urtA | D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 5508241 | 49 (1.140) | intergenic (+47/‑203) | cycA/urtA | D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein | |||||
CTGGAGGCGGATACCCGTTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5508075‑5508216‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccacATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCCGAGGCCATCAGCCGTTACGCACGGCCGTGCGGGGATGGCGCCTGCTGCGTACGAGCTGGTAGGTCACCGCCAGCACGACAAACCAGATCGGTGTCACCACCAGTGCT < NC_002947/5508241‑5508095 CTGGAGGCGGATACCCGTTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTC < 1:303340/138‑1CTGGAGGCGGATACCCGTTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTC > 2:303340/1‑138 CACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACATCGGACGGCGTACACCGTGCCTTCGTGGG > 2:1000926/1‑150 CTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACATCGGACGGCGTACACCGTGCCTTCGTGGGAA < 1:417372/150‑1 TGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGAGGGCCTCGGGGGCTGCTCCCACATCGGACGGCGTACACCGTGCCTTCGTGGGAAC < 2:164681/150‑1 GACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCC < 1:1000926/150‑1 CCACATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCCGAGGCCATCAGCCGTTACGCACGGCCGTGCGGGGATGGCGCCTGCTGCGTACGAGCTGGTAGGTCACCGCCAGCACGACAAACCAGATCGGTGTCACCACCAGTGC > 2:758651/1‑150 CACATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCCGAGGCCATCAGCCGTTACGCACGGCCGTGCGGGGATGGCGCCTGCTGCGTACGAGCTGGTAGGTCACCGCCAGCACGACAAACCAGATCGGTGTCACCACCAGTGCT < 1:758651/150‑1 CACATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCCGAGGCCATCAGCCGTTACGCACGGCCGTGCGGGGATGGCGCCTGCTGCGTACGAGCTGGTAGGTCACCGCCAGCACGACAAACCAGATCGGTGTCACCACCAGTGCT > 2:55398/1‑150 CTGGAGGCGGATACCCGTTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5508075‑5508216‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccacATCGGACGGCGTACACCGTGCCTTCGTGGGAACAGCCCCCGAGGCCATCAGCCGTTACGCACGGCCGTGCGGGGATGGCGCCTGCTGCGTACGAGCTGGTAGGTCACCGCCAGCACGACAAACCAGATCGGTGTCACCACCAGTGCT < NC_002947/5508241‑5508095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |