New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5508216	49 (1.090)	4 (0.090)	4/236	NT	7.7%	intergenic (+22/‑228)	cycA/urtA	D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein
	?	NC_002947	= 5508241	49 (1.140)					intergenic (+47/‑203)	cycA/urtA	D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein

TTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGCACAGCC  >  NC_002947/5508092‑5508387                                                                                                                                                      |                                                                                                                                                   ttCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGAt                                                                                                                                                    <  2:359168/150‑1 (MQ=255)    aGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATgtg                                                                                                                                                 <  1:758651‑M2/150‑4 (MQ=255)    aGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATgtg                                                                                                                                                 >  2:55398‑M2/1‑147 (MQ=255)     gCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATgtgg                                                                                                                                                >  2:758651‑M2/1‑146 (MQ=255)         tggtggTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAgc                                                                                                                                            <  1:47322/150‑1 (MQ=255)           gtggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCGGTCCGATGTGGGAgcgc                                                                                                                                          >  2:172848/1‑150 (MQ=255)           gtggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAgcgc                                                                                                                                          >  1:351914/1‑150 (MQ=255)           gtggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTAGTACTCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCGCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAgcgc                                                                                                                                          >  1:1124187/1‑150 (MQ=255)            tggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGAt                                                                                                                                                    >  1:593860/1‑139 (MQ=255)            tggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGAt                                                                                                                                                    <  2:593860/139‑1 (MQ=255)             ggtgACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGccc                                                                                                                                        <  2:486330/150‑1 (MQ=255)                gACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTtg                                                                                                                                     <  2:1165644/150‑1 (MQ=255)                 acacCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTAAGCAGCAGGCGCCATCACGGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTAGGCCGTCCGCTGTGGGATCGCCCTtgt                                                                                                                                    >  2:99087/1‑150 (MQ=255)                   acCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTgtgt                                                                                                                                  >  2:211737/1‑150 (MQ=255)                      gATCTGGTTTGTCGTACTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTcgc                                                                                                                               <  2:299851/150‑1 (MQ=255)                        tCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGa                                                                                                                             <  2:320178/150‑1 (MQ=255)                           ggTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATgg                                                                                                                          <  2:1043873/150‑1 (MQ=255)                           ggTTTGTCGCGCAGGTCTTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATgg                                                                                                                          <  2:1124187/150‑1 (MQ=255)                            gTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATggg                                                                                                                         <  1:211737/150‑1 (MQ=255)                             tttGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGc                                                                                                                        <  2:717019/150‑1 (MQ=255)                               tGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCg                                                                                                                      >  2:551627/1‑150 (MQ=255)                                 tCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCt                                                                                                                                       <  2:558167/131‑1 (MQ=255)                                 tCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCt                                                                                                                                       >  1:558167/1‑131 (MQ=255)                                    tGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGcggtg                                                                                                                 >  2:941152/1‑146 (MQ=255)                                        ggCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGc                                                                                                             <  2:995830/150‑1 (MQ=255)                                                 cTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTtg                                                                                                                                     <  1:848324/117‑1 (MQ=255)                                                 cTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTtg                                                                                                                                     >  2:848324/1‑117 (MQ=255)                                                    ccAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCCATGGGCCGCACCGCGGCCCCAATCCtgtg                                                                                                 >  1:1247/1‑150 (MQ=255)                                                     cAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGc                                                                                                <  2:91683/150‑1 (MQ=255)                                                     cAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGc                                                                                                >  1:91683/1‑150 (MQ=255)                                                         tCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGcacac                                                                                            <  1:458297/150‑1 (MQ=255)                                                                 agcagGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCAt                                                                                    <  1:99087/150‑1 (MQ=255)                                                                            tCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAAc                                                                         <  1:551627/150‑1 (MQ=255)                                                                               ccGCACCGCCGTGCGTAACGCCTGATGGCCTCGCGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTg                                                                      <  1:576720/150‑1 (MQ=255)                                                                                 gCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGa                                                                    <  2:88872/150‑1 (MQ=255)                                                                                 gCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGa                                                                    <  2:351914/150‑1 (MQ=255)                                                                                         gTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATccaa                                                               >  1:252016/1‑147 (MQ=255)                                                                                         gTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATccaa                                                               <  2:252016/147‑1 (MQ=255)                                                                                                      gATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGc                                                                                                             <  2:588210/88‑1 (MQ=255)                                                                                                      gATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGc                                                                                                             >  1:588210/1‑88 (MQ=255)                                                                                                            cTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGcac                                         >  1:554735/1‑150 (MQ=255)                                                                                                               gggggCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATgtgggaacagcccccgaggccatcagccgttacgcacggccgtgcggggatggcgcctgctgcgtacgagctggtaggtcaccgccagcacgacaaaccagatcggtgtc                                      <  1:1000926‑M2/150‑111 (MQ=255)                                                                                                               gggggCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGc                                      <  1:397218/150‑1 (MQ=255)                                                                                                                 gggCTGTTCCCACGAAGGCACGGTGCACGCCGTACGATGTTGCTCGGCCGTGCTTTCGCGATGGGCCGCACCGCGCCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGccc                                    <  1:569969/150‑1 (MQ=255)                                                                                                                 gggCTGTTCCCACGAAGGCACGGTATATGTTGTCCTTCCAGGTTGCCGCCTTGGGTCTCGATGGGCCGCACAACTGGCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGccc                                    <  1:569967/150‑1 (MQ=255)                                                                                                                  ggCTGTTCCCACGAAGGCACGGTGTCGGAGGTCTGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGcccc                                   >  1:337546/1‑150 (MQ=39)                                                                                                                    cTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCctc                                 >  2:1019941/1‑150 (MQ=255)                                                                                                                      gTTCCCACGAAGGCACGGTGTACGCCGTCCGATgtgggagcagcccccgaggccctcagccgttacgcacggccgtgcggggatggcgcctgctgcgtacgagctggtaggtcaccgccagcacgacaaaccagatcggtgtcaccacca                               <  2:164681‑M2/150‑118 (MQ=255)                                                                                                                       ttCCCACGAAGGCACGGTGTACGCCGTCCGATgtgggaacagcccccgaggccatcagccgttacgcacggccgtgcggggatggcgcctgctgcgtacgagctggtaggtcaccgccagcacgacaaaccagatcggtgtcaccaccag                              <  1:417372‑M2/150‑119 (MQ=255)                                                                                                                         cccACGAAGGCACGGTGTACGCCGTCCGATgtgggaacagcccccgaggccatcagccgttacgcacggccgtgcggggatggcgcctgctgcgtacgagctggtaggtcaccgccagcacgacaaaccagatcggtgtcaccaccagtg                            >  2:1000926‑M2/1‑30 (MQ=255)                                                                                                                            aCGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGt                         >  1:519395/1‑150 (MQ=255)                                                                                                                            aCGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGt                         >  1:1123022/1‑150 (MQ=255)                                                                                                                            aCGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGACCCACTCCTGTGCACACAAATCCATGAGGCACCAACCTGGATCCAACCAACCCGCCAAGACCACGGACAGCCCCTCTAAGCCGt                         >  1:665149/1‑150 (MQ=255)                                                                                                                              gAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGCCGCCGAGATCTACACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTAc                       <  2:337546/150‑1 (MQ=255)                                                                                                                                    aCGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCg                 >  2:354725/1‑150 (MQ=255)                                                                                                                                        tgtACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCAc             >  2:566918/1‑150 (MQ=255)                                                                                                                                           aCGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAg          <  2:519395/150‑1 (MQ=255)                                                                                                                                           aCGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAg          <  2:1123022/150‑1 (MQ=255)                                                                                                                                             gCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGc        >  2:1177919/1‑150 (MQ=255)                                                                                                                                             gCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGc        >  1:662145/1‑150 (MQ=255)                                                                                                                                                 tCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCcaaccaac                                                          >  2:709001/1‑96 (MQ=255)                                                                                                                                                 tCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCcaaccaac                                                          <  1:709001/96‑1 (MQ=255)                                                                                                                                                 tCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGCACAg    <  1:1019941/150‑1 (MQ=255)                                                                                                                                                   cGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGCACAGcc  <  1:354725/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TTCAGCACTGGTGGTGACACCGATCTGGTTTGTCGTGCTGGCGGTGACCTACCAGCTCGTACGCAGCAGGCGCCATCCCCGCACGGCCGTGCGTAACGGCTGATGGCCTCGGGGGCTGTTCCCACGAAGGCACGGTGTACGCCGTCCGATGTGGGAGCGCCCTTGTGTCGCGATGGGCCGCACCGCGGCCCCAATCCTGTGCACACAAATCCATCAGGCACCAACCTGGATCCAACCAACGCCCCAAGACCTCGCACAGCCCCTCTAAACCGTACCTTTCGCCACTAGGCACAGCC  >  NC_002947/5508092‑5508387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.