New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5621274 =	39 (0.860)	4 (0.090)	4/236	NT	9.9%	coding (41/774 nt)	PP_4939	hypothetical protein
	?	NC_002947	5621291 =	36 (0.840)					coding (24/774 nt)	PP_4939	hypothetical protein

CCGCCATTGTCTGCATGGCAGCGGCTGCGTCTGAAGCTGGGCATCTAAACAAGAGCTTTCACGCCCAGGAGCGGGTTGTTGAAGGCCGATAGTCGTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACGCTCG‑T‑CGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5621427‑5621274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgacGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGA  >  NC_002947/5621291‑5621438                                                                                                                                                                                                                                                                                                                  CCGCCATTGTCTGCATGGCAGCGGCTGCGTCTGAAGCTGGGCATCTAAACAAGAGCTTTCACGCCCAGAAGCGGGTTGTTGAAGGCCGATAGTCGTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACGCTCG‑T‑CG                                                                                                                                                          >  2:372470/1‑150  CGCCATTGTCTGCATGGCAGCGGCTGCGTCTGAAGCTGGGCATCTAAACAAGAGCTTTCACGCCCAGGAGCGGGTTGTTGAAGGCCGATAGTCGTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACGCTCG‑T‑CGT                                                                                                                                                         >  2:469715/1‑150                        GCTGCGTCTGAAGCTGGGCATCTAAACAAGAGCTTTCACGCCCAGGAGCGGGTTGTTGAAGGCCGATAGTCGTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTAACGTCACG‑ACG‑AGCGTGACGTCACTCTCATTTGAAAAG                                                                                                                                   <  2:415629/150‑1                                                                                               GTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACG‑ACGAG‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATT                                                                                                                        >  1:618960/1‑90                                                                                               GTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACG‑ACGAG‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATT                                                                                                                        <  2:618960/90‑1                                                                                                                                        ACGTCACGCTCG‑T‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACACCCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGTAGACAA                   >  1:981140/1‑150                                                                                                                                                           ACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGA  >  2:1116638/1‑150                                                                                                                                                                                                                                                                                                                  CCGCCATTGTCTGCATGGCAGCGGCTGCGTCTGAAGCTGGGCATCTAAACAAGAGCTTTCACGCCCAGGAGCGGGTTGTTGAAGGCCGATAGTCGTAATGCGGAGGGAATCCGGTGCGCTTTTCAAATGAGAGTGACGTCACGCTCG‑T‑CGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5621427‑5621274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgacGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGA  >  NC_002947/5621291‑5621438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.