| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5621274 = | 39 (0.860) | 4 (0.090) | 4/236 | NT | 9.9% | coding (41/774 nt) | PP_4939 | hypothetical protein |
| ? | NC_002947 | 5621291 = | 36 (0.840) | coding (24/774 nt) | PP_4939 | hypothetical protein | |||||
TGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGA > NC_002947/5621125‑5621418 | tGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTgg < 2:363548/150‑1 (MQ=255) tcaggccccacccgccattgtctgcatggcagcggctgcgtctgaagctgggcatctaaacaagagctttcacgcccaggagcgggttgttgaaggccgatagtcgtaatgcggagggaatccggtgcgcttttcaaatgagagtgacGt > 2:1116638‑M1/149‑150 (MQ=255) cGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCacg‑a‑c > 1:1020930/1‑150 (MQ=255) ggCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCacg‑a‑cg > 2:856928/1‑150 (MQ=255) tCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCg > 2:1137840/1‑150 (MQ=255) gTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATTGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTTGTCACG‑A‑CGAGCGTGAc < 2:710670/150‑1 (MQ=255) gTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGAc < 2:1020930/150‑1 (MQ=255) ttgtctacatggcagcggctgcgtctgaagctgggcatctaaacaagagctttcacgcccaggagcggggtgttgaaggccgatagtcgtaatgcggagggaatccggtgcgcttttcaaatgagagtgacGTCACG‑A‑CGAGCGTGACGt > 1:981140‑M1/132‑150 (MQ=255) acaGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCa < 1:1137840/150‑1 (MQ=255) cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAgcg < 2:785037/150‑1 (MQ=255) cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGGGGCTTTGAGCAGATCGAACGGCCCACAACTGGTCACG‑A‑CTAGCGTGACGTCACTCTCATTTGAAAAgcg > 1:689382/1‑150 (MQ=255) ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACTTCACTCTCATTTGAAAAGCGCACCGGATTCCCTc > 2:642593/1‑143 (MQ=255) ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACTTCACTCTCATTTGAAAAGCGCACCGGATTCCCTc < 1:642593/143‑1 (MQ=255) ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTa > 1:1067872/1‑150 (MQ=255) tACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGcc < 2:135255/150‑1 (MQ=255) cTCGCTAATGGGCGCGGTGTTGTAGCGATAGAAACTCTCACGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCAAG‑A‑CGAGCGTGACGTTACTCTCATTTGAAATGCGCACCGGATTCCGTCCGCATTACGACTATCGGCCTTc < 1:116628/150‑1 (MQ=255) cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc > 1:38745/1‑150 (MQ=255) cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc > 1:1094503/1‑150 (MQ=255) cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc > 2:497790/1‑150 (MQ=255) cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc < 1:615106/150‑1 (MQ=255) tCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAc < 2:98676/116‑1 (MQ=255) tCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAc > 1:98676/1‑116 (MQ=255) gcgcGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCt < 1:894401/137‑1 (MQ=255) gcgcGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCt > 2:894401/1‑137 (MQ=255) cgcgGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTc < 2:38745/150‑1 (MQ=255) ttgtAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCg > 2:208640/1‑150 (MQ=255) aaGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGATCCTGGGCGTGAAAGCTCTTGTTTAGATg > 2:720383/1‑150 (MQ=255) ggatgtCTTTGCGCAGGGCGAACCGCCCACAACTGGGCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGcc > 2:1168744/4‑150 (MQ=255) aatccggtgcgcttttcaaatgagagtgacGTCACG‑CTCGT‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc < 2:618960‑M1/60‑1 (MQ=255) aatccggtgcgcttttcaaatgagagtgacGTCACG‑CTCGT‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc > 1:618960‑M1/31‑90 (MQ=255) tttGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTTAAAAGCGCACCGGATTCGCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATTCCCAGCTTc > 1:363914/1‑150 (MQ=255) gAGCAGATCGAACCGCCCACAGCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGATCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGa < 1:720383/150‑1 (MQ=255) gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGc > 2:889804/1‑35 (MQ=255) gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGc < 1:889804/35‑1 (MQ=255) gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGt > 2:121885/1‑117 (MQ=255) gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGt < 1:121885/117‑1 (MQ=255) cttttcaaatgagagtgacGTCACGCT‑CGT‑CGTGACGTTACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGc < 2:415629‑M1/131‑1 (MQ=255) aTCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGc > 2:221823/1‑150 (MQ=255) aTCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTG‑AAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGcc > 1:857308/1‑150 (MQ=255) aaCCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCgg > 2:751906/1‑84 (MQ=255) aaCCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCgg < 1:751906/84‑1 (MQ=255) cccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCt < 1:985325/61‑1 (MQ=255) cccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCt > 2:985325/1‑61 (MQ=255) ccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAGCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATg > 2:440958/1‑150 (MQ=255) ccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATg > 1:1070021/1‑150 (MQ=255) aaCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGa > 1:469715/1‑150 (MQ=255) aaCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGa < 2:689382/150‑1 (MQ=255) tGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCAt > 1:471930/1‑142 (MQ=255) tGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCAt < 2:471930/142‑1 (MQ=255) | TGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGA > NC_002947/5621125‑5621418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |