New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5621274 =	39 (0.860)	4 (0.090)	4/236	NT	9.9%	coding (41/774 nt)	PP_4939	hypothetical protein
	?	NC_002947	5621291 =	36 (0.840)					coding (24/774 nt)	PP_4939	hypothetical protein

GCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGA  >  NC_002947/5621143‑5621438                                                                                                                                                       |                                                                                                                                                    ttgtctacatggcagcggctgcgtctgaagctgggcatctaaacaagagctttcacgcccaggagcggggtgttgaaggccgatagtcgtaatgcggagggaatccggtgcgcttttcaaatgagagtgacGTCACG‑A‑CGAGCGTGACGt                                                                                                                                                    >  1:981140‑M1/132‑150 (MQ=255)         acaGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCa                                                                                                                                            <  1:1137840/150‑1 (MQ=255)                    gctgcgtctgaagctgggcatctaaacaagagctttcacgcccaggagcgggttgttgaaggccgatagtcgtaatgcggagggaatccggtgcgcttttcaaatgagagtaacgtcacgacgagcgtgacGTCACTCTCATTTGAAAAg                                                                                                                                   <  2:415629‑M2/19‑1 (MQ=255)                    cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAgcg                                                                                                                                 <  2:785037/150‑1 (MQ=255)                    cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGGGGCTTTGAGCAGATCGAACGGCCCACAACTGGTCACG‑A‑CTAGCGTGACGTCACTCTCATTTGAAAAgcg                                                                                                                                 >  1:689382/1‑150 (MQ=255)                                         ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACTTCACTCTCATTTGAAAAGCGCACCGGATTCCCTc                                                                                                                   >  2:642593/1‑143 (MQ=255)                                         ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACTTCACTCTCATTTGAAAAGCGCACCGGATTCCCTc                                                                                                                   <  1:642593/143‑1 (MQ=255)                                         ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTa                                                                                                            >  1:1067872/1‑150 (MQ=255)                                                     tACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGcc                                                                                                <  2:135255/150‑1 (MQ=255)                                                        cTCGCTAATGGGCGCGGTGTTGTAGCGATAGAAACTCTCACGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCAAG‑A‑CGAGCGTGACGTTACTCTCATTTGAAATGCGCACCGGATTCCGTCCGCATTACGACTATCGGCCTTc                                                                                             <  1:116628/150‑1 (MQ=255)                                                        cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc                                                                                             <  1:615106/150‑1 (MQ=255)                                                        cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc                                                                                             >  2:497790/1‑150 (MQ=255)                                                        cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc                                                                                             >  1:1094503/1‑150 (MQ=255)                                                        cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTc                                                                                             >  1:38745/1‑150 (MQ=255)                                                         tCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAc                                                                                                                              <  2:98676/116‑1 (MQ=255)                                                         tCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAc                                                                                                                              >  1:98676/1‑116 (MQ=255)                                                                   gcgcGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCt                                                                                               <  1:894401/137‑1 (MQ=255)                                                                   gcgcGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCt                                                                                               >  2:894401/1‑137 (MQ=255)                                                                    cgcgGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTc                                                                                 <  2:38745/150‑1 (MQ=255)                                                                           ttgtAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCg                                                                          >  2:208640/1‑150 (MQ=255)                                                                                           gtaatgcggagggaatccggtgcgcttttcaaatgagagtgacgtcacgacgagcgtgacGTCACTCTCATTTGAAAAGCGCACCGGAtt                                                                                                                        <  2:618960‑M2/30‑1 (MQ=255)                                                                                           gtaatgcggagggaatccggtgcgcttttcaaatgagagtgacgtcacgacgagcgtgacGTCACTCTCATTTGAAAAGCGCACCGGAtt                                                                                                                        >  1:618960‑M2/61‑90 (MQ=255)                                                                                               aaGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGATCCTGGGCGTGAAAGCTCTTGTTTAGATg                                                      >  2:720383/1‑150 (MQ=255)                                                                                                 ggatgtCTTTGCGCAGGGCGAACCGCCCACAACTGGGCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGcc                                                    >  2:1168744/4‑150 (MQ=255)                                                                                                      aatccggtgcgcttttcaaatgagagtgacGTCACG‑CTCGT‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc                                                                                                           <  2:618960‑M1/60‑1 (MQ=255)                                                                                                      aatccggtgcgcttttcaaatgagagtgacGTCACG‑CTCGT‑CGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc                                                                                                           >  1:618960‑M1/31‑90 (MQ=255)                                                                                                        tttGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTTAAAAGCGCACCGGATTCGCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATTCCCAGCTTc                                             >  1:363914/1‑150 (MQ=255)                                                                                                           gAGCAGATCGAACCGCCCACAGCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGATCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGa                                          <  1:720383/150‑1 (MQ=255)                                                                                                             gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGt                                                                         <  1:121885/117‑1 (MQ=255)                                                                                                             gCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGt                                                                         >  2:121885/1‑117 (MQ=255)                                                                                                                 cttttcaaatgagagtgacGTCACGCT‑CGT‑CGTGACGTTACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGc                                    <  2:415629‑M1/131‑1 (MQ=255)                                                                                                                 aTCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGc                                    >  2:221823/1‑150 (MQ=255)                                                                                                                 aTCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTG‑AAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGcc                                   >  1:857308/1‑150 (MQ=255)                                                                                                                     aaCCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCgg                                                                                                  >  2:751906/1‑84 (MQ=255)                                                                                                                     aaCCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCgg                                                                                                  <  1:751906/84‑1 (MQ=255)                                                                                                                          cccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCt                                                                                                                    <  1:985325/61‑1 (MQ=255)                                                                                                                          cccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCt                                                                                                                    >  2:985325/1‑61 (MQ=255)                                                                                                                           ccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCAGCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATg                          >  2:440958/1‑150 (MQ=255)                                                                                                                           ccACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATg                          >  1:1070021/1‑150 (MQ=255)                                                                                                                               aaCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGa                      <  2:689382/150‑1 (MQ=255)                                                                                                                               aaCTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGa                      >  1:469715/1‑150 (MQ=255)                                                                                                                                  tGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCAt                           <  2:471930/142‑1 (MQ=255)                                                                                                                                  tGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCAt                           >  1:471930/1‑142 (MQ=255)                                                                                                                                    acgtcacgctcgtcgtgacGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACACCCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGTAGACaa                   >  1:981140‑M2/20‑150 (MQ=255)                                                                                                                                       ACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCg              >  2:469715‑M1/1‑150 (MQ=255)                                                                                                                                        CG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTTCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCgg             >  2:372470‑M1/1‑150 (MQ=255)                                                                                                                                                     acGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGa  >  2:1116638‑M2/3‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                    GCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACG‑A‑CGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGA  >  NC_002947/5621143‑5621438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.