| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5942640 = | 49 (1.090) | 3 (0.070) | 3/238 | NT | 6.4% | intergenic (‑70/‑31) | PP_5209/PP_5210 | hypothetical protein/alcohol dehydrogenase |
| ? | NC_002947 | 5942673 = | 40 (0.920) | coding (3/978 nt) | PP_5210 | alcohol dehydrogenase | |||||
GAAGTTGACCCCGGCAGCTTGCACGTCCAGCAGGATCTCGTTCTTCTTCGGCAGTGGGCTGGCCACCTCTTCCAGCACCAGGTTGCGCGCCGGACCCAGGGTTTTGCACAACACAGCTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5942793‑5942640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAAGGCAAG > NC_002947/5942673‑5942820 GAAGTTGACCCCGGCAGCTTGCACGTCCAGCAGGATCTCGTTCTTCTTCGGCAGTGGGCTGGCCACCTCTTCCAGCACCAGGTTGCGCGCCGGACCCAGGGTTTTGCACAACACAGCTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGC > 1:903796/1‑150 GACCCCGGCAGCTTGCACGTCCAGCAGGATCTCGTTCTTCTTCGGCAGTGGGCTGGCCACCTCTTCCAGCACCAGGTTGCGCGCCGGACCCAGGGTTTTGCACAACACAGCTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGC < 1:550140/144‑1 GACCCCGGCAGCTTGCACGTCCAGCAGGATCTCGTTCTTCTTCGGCAGTGGGCTGGCCACCTCTTCCAGCACCAGGTTGCGCGCCGGACCCAGGGTTTTGCACAACACAGCTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGC > 2:550140/1‑144 CTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCGAGCCCAATGGCGCAGACGGGTGATCTCCGGCGTGACGGGCAAGCTGCCGGG > 2:1036767/1‑150 TTTCATCGGGGCTATTCCTTTGCGGGTAGTGGCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGT‑CGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCT > 1:1012782/1‑129 TTTCATCGGGGCTATTCCTTTGCGGGTAGTGGCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGT‑CGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCT < 2:1012782/129‑1 CCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTTCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAA < 1:227979/147‑1 CCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTTCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAA > 2:227979/1‑147 ATGAAAGCTGTGTTGTGCACCACCCTCCGTGCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAACAACTAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGCCACCTTGATCATCGAAGGCAAG < 2:315916/150‑1 GAAGTTGACCCCGGCAGCTTGCACGTCCAGCAGGATCTCGTTCTTCTTCGGCAGTGGGCTGGCCACCTCTTCCAGCACCAGGTTGCGCGCCGGACCCAGGGTTTTGCACAACACAGCTTTCATCGGGGCTATTCCTTTGCGGGTAGTGGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5942793‑5942640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAAGGCAAG > NC_002947/5942673‑5942820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |