New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5942640 =	49 (1.090)	3 (0.070)	3/238	NT	6.4%	intergenic (‑70/‑31)	PP_5209/PP_5210	hypothetical protein/alcohol dehydrogenase
	?	NC_002947	5942673 =	40 (0.920)					coding (3/978 nt)	PP_5210	alcohol dehydrogenase

AATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAAGGCAAG  >  NC_002947/5942527‑5942820                                                                                                                                                   |                                                                                                                                                    actACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGTCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                                                                  <  2:354328/148‑1 (MQ=255)  cccggcagcttgcccgtcacgccggagatcacccgtctgcgccattgggctcgccacctcttccagcaccaggttgcgcgccggacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAg                                                                                                                                                 >  2:1036767‑M1/113‑150 (MQ=255)   tACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGc                                                                                                                                                >  2:891436/1‑150 (MQ=255)      aGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCtgt                                                                                                                                             >  1:106054/1‑150 (MQ=255)             gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCGCTACCCGCAAAGGAATAGCCCCGATGAAAGCtgtg                                                                                                                                            >  2:825879/1‑144 (MQ=255)             gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCtgtg                                                                                                                                            <  1:825879/144‑1 (MQ=255)             gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTtgtg                                                                                                                                       >  2:143341/1‑149 (MQ=255)             gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTtgtg                                                                                                                                       <  1:143341/149‑1 (MQ=255)                    tACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAAccc                                                                                                                               <  1:92728/150‑1 (MQ=255)                      agcaggatctcgttcttcttcggcagtgggctggccacctcttccagcaccaggttgcgcgccgacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                                                                  >  1:1012782‑M1/93‑129 (MQ=255)                      agcaggatctcgttcttcttcggcagtgggctggccacctcttccagcaccaggttgcgcgccgacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                                                                  <  2:1012782‑M1/37‑1 (MQ=255)                       ccAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTgg                                                                                                                            <  2:505199/150‑1 (MQ=255)                              acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgc                                                                                                                     >  2:300550/1‑150 (MQ=255)                              acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgc                                                                                                                     >  1:1202335/1‑150 (MQ=255)                                  cTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgcgcgc                                                                                                                 >  1:65882/1‑150 (MQ=255)                                   tCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGACAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCACCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCa                                                                                                                >  2:505850/1‑150 (MQ=255)                                        cccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCTCTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTg                                                                                                           <  1:990447/150‑1 (MQ=255)                                         ccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTgg                                                                                                          >  2:803936/1‑150 (MQ=255)                                         ccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTgg                                                                                                          <  1:818791/150‑1 (MQ=255)                                          cAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGt                                                                                                         <  2:38294/150‑1 (MQ=255)                                           aaGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTg                                                                                                        <  2:1202335/150‑1 (MQ=255)                                            aGCCCGGGCGTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGc                                                                                                       <  1:564845/150‑1 (MQ=255)                                              cccGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTg                                                                                                     >  2:903796/1‑150 (MQ=255)                                                cGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGa                                                                                                   <  1:300550/150‑1 (MQ=255)                                                 gggCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGaa                                                                                                  >  1:709435/1‑150 (MQ=255)                                                    cTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                                                               <  2:65882/150‑1 (MQ=255)                                                     ttATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAAc                                                                                                              >  2:311190/1‑134 (MQ=255)                                                     ttATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAAc                                                                                                              <  1:311190/134‑1 (MQ=255)                                                        tGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTgg                                                                                           <  2:709435/150‑1 (MQ=255)                                                           cGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTCGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                                                                        >  1:373246/1‑150 (MQ=255)                                                                 aTCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                                                                        <  1:99730/144‑1 (MQ=255)                                                                 aTCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                                                                        >  2:99730/1‑144 (MQ=255)                                                                               tGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTCGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAAc                                                                    <  2:373246/150‑1 (MQ=255)                                                                                   cGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACgaga                                                                <  1:803936/150‑1 (MQ=255)                                                                                        aCCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                                                               <  2:1092040/114‑1 (MQ=255)                                                                                        aCCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                                                               >  1:1092040/1‑114 (MQ=255)                                                                                              cAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGAGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGAc                                                     <  2:106054/150‑1 (MQ=255)                                                                                                  cGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGc                                                 <  1:505850/150‑1 (MQ=255)                                                                                                     cccTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAg                                              >  1:315916/1‑150 (MQ=255)                                                                                                      cctcctACACTTAGCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGCCGTGCAAGc                                             >  2:1110182/1‑150 (MQ=255)                                                                                                             ctttcatcggggctattcctttgcgggtagtggccgatGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCGAGCCCAATGGCGCAGACGGGTGATCTCCGGCGTGACGGGCAAGCTGCCggg                                      >  2:1036767‑M2/39‑150 (MQ=255)                                                                                                              tttcatcggggctattcctttgcgggtagtggccgatGAAAGCTGTGTTGTGCAAAACCCTGGGT‑CGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCctgct                                                         <  2:1012782‑M2/92‑1 (MQ=255)                                                                                                              tttcatcggggctattcctttgcgggtagtggccgatGAAAGCTGTGTTGTGCAAAACCCTGGGT‑CGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCctgct                                                         >  1:1012782‑M2/38‑129 (MQ=255)                                                                                                                      GCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTc                                   >  2:550140‑M1/1‑144 (MQ=255)                                                                                                                      GCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTc                                   <  1:550140‑M1/144‑1 (MQ=255)                                                                                                                      GCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTc                             >  1:903796‑M1/1‑150 (MQ=255)                                                                                                                       ccACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAAc                                                                    >  2:1143001/1‑110 (MQ=255)                                                                                                                       ccACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAAc                                                                    <  1:1143001/110‑1 (MQ=255)                                                                                                                                    aGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGat               <  1:891436/150‑1 (MQ=255)                                                                                                                                    aGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGat               >  2:9557/1‑150 (MQ=255)                                                                                                                                              ccgatGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTTCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGaa        >  2:227979‑M2/6‑147 (MQ=255)                                                                                                                                              ccgatGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTTCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGaa        <  1:227979‑M2/142‑1 (MQ=255)                                                                                                                                                 atGAAAGCTGTGTTGTGCACCACCCTCCGTGCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAACAACTAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGCCACCTTGATCATCGAAGGCAAg  <  2:315916‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGCTGCCGGGGTCAACTTCCCCGACACCTTGATCATCGAAGGCAAG  >  NC_002947/5942527‑5942820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.