New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5942640 =	49 (1.090)	3 (0.070)	3/238	NT	6.4%	intergenic (‑70/‑31)	PP_5209/PP_5210	hypothetical protein/alcohol dehydrogenase
	?	NC_002947	5942673 =	40 (0.920)					coding (3/978 nt)	PP_5210	alcohol dehydrogenase

ACCATCAAGATCCACGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGC  >  NC_002947/5942491‑5942777                                                                                                                                                      |                                                                                                                                          aCCATCAAGATCCACGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTa                                                                                                                                           >  2:1066192/1‑150 (MQ=255)  cttgccttcgatgatcaaggtggcggggaagttgaccccggcagcttgcacgtccagcaggatctagttgttcttcggcagtgggctggccacctcttccagcaccaggttgcgcgccgcacggagggtggtgcacaacacagctttcAt                                                                                                                                          <  2:315916‑M1/2‑1 (MQ=255)        ttcgatgatcaaggtgtcggggaagttgaccccggcagcttgcacgtccagcaggatctcgttcttcttcggcagtgggctggccacctcttccagaaccaggttgcgcgccggacccagggttttgcacaacacagctttcATCgg                                                                                                                                       <  1:227979‑M1/5‑1 (MQ=255)        ttcgatgatcaaggtgtcggggaagttgaccccggcagcttgcacgtccagcaggatctcgttcttcttcggcagtgggctggccacctcttccagaaccaggttgcgcgccggacccagggttttgcacaacacagctttcATCgg                                                                                                                                       >  2:227979‑M1/143‑147 (MQ=255)            ccACGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTAc                                                                                                                                <  1:1066192/150‑1 (MQ=255)             cACGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTAcc                                                                                                                               >  1:377078/1‑150 (MQ=255)              aCGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTAccc                                                                                                                              >  2:541480/1‑150 (MQ=255)                      aCGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGc                                                                                                                                      <  1:149804/134‑1 (MQ=255)                      aCGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGc                                                                                                                                      >  2:149804/1‑134 (MQ=255)                      aCGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGa                                                                                                                      <  2:377078/150‑1 (MQ=255)                       cGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGaa                                                                                                                     <  2:1075490/150‑1 (MQ=255)                         aaTTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATa                                                                                                                   <  1:541480/150‑1 (MQ=255)                                     actACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGTCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                       <  2:354328/148‑1 (MQ=255)                                      cccggcagcttgcccgtcacgccggagatcacccgtctgcgccattgggctcgccacctcttccagcaccaggttgcgcgccggacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAg                                                                                                      >  2:1036767‑M1/113‑150 (MQ=255)                                       tACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGc                                                                                                     >  2:891436/1‑150 (MQ=255)                                          aGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCtgt                                                                                                  >  1:106054/1‑150 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCGCTACCCGCAAAGGAATAGCCCCGATGAAAGCtgtg                                                                                                 >  2:825879/1‑144 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGa                                                                                                            <  1:10157/133‑1 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGa                                                                                                            >  2:10157/1‑133 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCtgtg                                                                                                 <  1:825879/144‑1 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTtgtg                                                                                            <  1:143341/149‑1 (MQ=255)                                                 gcCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTtgtg                                                                                            >  2:143341/1‑149 (MQ=255)                                                        tACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAAccc                                                                                    <  1:92728/150‑1 (MQ=255)                                                          agcaggatctcgttcttcttcggcagtgggctggccacctcttccagcaccaggttgcgcgccgacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                       >  1:1012782‑M1/93‑129 (MQ=255)                                                          agcaggatctcgttcttcttcggcagtgggctggccacctcttccagcaccaggttgcgcgccgacccagggttttgcacaacacagctttcATCGGCCACTACCCGCAAAGGAATAGCCCCGATGaaa                                                                                                       <  2:1012782‑M1/37‑1 (MQ=255)                                                           ccAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTgg                                                                                 <  2:505199/150‑1 (MQ=255)                                                                  acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGa                                                                                                                      >  2:1189554/1‑106 (MQ=255)                                                                  acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGa                                                                                                                      <  1:1189554/106‑1 (MQ=255)                                                                  acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgc                                                                          >  2:300550/1‑150 (MQ=255)                                                                  acCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgc                                                                          >  1:1202335/1‑150 (MQ=255)                                                                      cTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGgcgcgc                                                                      >  1:65882/1‑150 (MQ=255)                                                                       tCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGACAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCACCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCa                                                                     >  2:505850/1‑150 (MQ=255)                                                                            cccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCTCTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTg                                                                <  1:990447/150‑1 (MQ=255)                                                                             ccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTgg                                                               >  2:803936/1‑150 (MQ=255)                                                                             ccAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTgg                                                               <  1:818791/150‑1 (MQ=255)                                                                              cAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGt                                                              <  2:38294/150‑1 (MQ=255)                                                                               aaGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTg                                                             <  2:1202335/150‑1 (MQ=255)                                                                                aGCCCGGGCGTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGc                                                            <  1:564845/150‑1 (MQ=255)                                                                                  cccGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTg                                                          >  2:903796/1‑150 (MQ=255)                                                                                    cGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGa                                                        <  1:300550/150‑1 (MQ=255)                                                                                     gggCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGaa                                                       >  1:709435/1‑150 (MQ=255)                                                                                        cTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                    <  2:65882/150‑1 (MQ=255)                                                                                         ttATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAAc                                                                   >  2:311190/1‑134 (MQ=255)                                                                                         ttATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAAc                                                                   <  1:311190/134‑1 (MQ=255)                                                                                            tGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTgg                                                <  2:709435/150‑1 (MQ=255)                                                                                               cGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTCGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                             >  1:373246/1‑150 (MQ=255)                                                                                                     aTCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                             >  2:99730/1‑144 (MQ=255)                                                                                                     aTCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCa                                             <  1:99730/144‑1 (MQ=255)                                                                                                                   tGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTCGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAAc                         <  2:373246/150‑1 (MQ=255)                                                                                                                       cGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACgaga                     <  1:803936/150‑1 (MQ=255)                                                                                                                            aCCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                    >  1:1092040/1‑114 (MQ=255)                                                                                                                            aCCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAagag                                                    <  2:1092040/114‑1 (MQ=255)                                                                                                                                  cAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGAGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGAc          <  2:106054/150‑1 (MQ=255)                                                                                                                                      cGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGc      <  1:505850/150‑1 (MQ=255)                                                                                                                                         cccTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAg   >  1:315916/1‑150 (MQ=255)                                                                                                                                          cctcctACACTTAGCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGCCGTGCAAGc  >  2:1110182/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                          ACCATCAAGATCCACGCTTTCACGAATTCGCTCCTCAATACAGTTGGCGCCAGCTTACCCAGCACACCGCTCAAACCCAAGCCCGGGCTTATGCCGGCCCATCAGGGCGGGCCATGCTCGTTGACCTGCCAAGCGGCCCTCCTACACTTATCGGCCACTACCCGCAAAGGAATAGCCCCGATGAAAGCTGTGTTGTGCAAAACCCTGGGTCCGGCGCGCAACCTGGTGCTGGAAGAGGTGGCCAGCCCACTGCCGAAGAAGAACGAGATCCTGCTGGACGTGCAAGC  >  NC_002947/5942491‑5942777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.